BP_MULT...MSEARCH(1p)

💖 BP_MULT...MSEARCH(1p) 💖

okay bestie, so this whole page is the manual for multi_hmmsearch, and it lives in the BP_MULT...MSEARCH(1p) corner of the perl-verse. let's get into it 🫶

---

✨ NAME ✨

multi_hmmsearch — perform a hmmsearch into multiple FASTA files using an INDEX file 🌸

---

🎀 SYNOPSIS 🎀

multi_hmmsearch -p hmm_file [-i] -f index_file

---

🦋 DESCRIPTION 🦋

so like, technically this is not a Bio::Tools::Run script, because it doesn't use any Bioperl or Bioperl-run components at all. but honestly? it's useful. periodt. 💅

💜 Mandatory Options 💜

these are the non-negotiables, no skipping, iykyk:

• -p — the HMM profile you're gonna use for the search 🔍
• -f — the INDEX file that contains a list of FASTA files for the multiple search 📋

🌈 Special Options 🌈

the lil extras, the main character energy options:

• -i — create a new index file with the resulting hmms files. this is useful if you wanna pass this list as input arguments into another programs 👑
• -h — show this documentation 🫶

---

💌 FEEDBACK 💌

📬 Mailing Lists 📬

user feedback is an integral part of the evolution of this and other Bioperl modules, fr fr. send your comments and suggestions preferably to the Bioperl mailing list. your participation is much appreciated 💖

• bioperl-l@bioperl.org — General discussion
• http://bioperl.org/wiki/Mailing_lists — About the mailing lists

🐛 Reporting Bugs 🐛

report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. bug reports can be submitted via the web:

• http://redmine.open-bio.org/projects/bioperl/

---

👑 AUTHOR 👑

• Mauricio Herrera Cuadra <mauricio-at-open-bio.org>

---

and that's the whole vibe, bestie — this page ships with perl v5.36.0, dated 2023-01-22, and it's filed under BP_MULT...MSEARCH(1p). slay, go run your searches 💅✨