BP_MAKE...PROTEIN(1p)

✨ NAME ✨

Okay so bestie, this is the BP_MAKE...PROTEIN(1p) manual from User Contributed Perl Documentation, and it's all about bp_make_mrna_protein. This command converts an input mRNA/cDNA sequence into protein, and honestly? Obsessed. 🧬💖

🌸 DESCRIPTION 🌸

Bestie, this tool converts an input mRNA/cDNA sequence into protein using translate(). It's literally the main character of your sequence pipeline. 👑

The frame option is right here:

• -f/--frame — specifies frame [0,1,2]. Choose your fighter. 🎀

You can also specify these cuties:

• -t/--terminator — Stop Codon character (defaults to '*').
• -u/--unknown — Unknown Protein character (defaults to 'X').
• -cds/--fullcds — Expected Full CDS (with start and Stop codon).
• -throwOnError — Throw error if no Full CDS (defaults to 0).
• -if/--format — Input format (defaults to FASTA/Pearson).
• -of/--format — Output format (defaults to FASTA/Pearson).
• -o/--output — Output Filename (defaults to STDOUT).
• -i/--input — Input Filename (defaults to STDIN).
• -ct/--codontable — Codon table to use (defaults to '1').

For more tea on codon tables and the translate() method, go check out Bio::PrimarySeq. It's lowkey essential. 📚✨

👑 AUTHOR 👑

Jason Stajich — email: jason-at-bioperl-dot-org. Iconic behavior, honestly. 💅

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mwah 💋 this manual came from perl v5.32.1, dated 2021-08-15, and it lives as BP_MAKE...PROTEIN(1p). Byeee bestie! 🦋💖