BP_EXTR...URE_SEQ(1p)

📦
version 1.7.8 · 3 versions
, in debian bookworm, debian trixie, ubuntu jammy, ubuntu noble

✨ BP_EXTR...URE_SEQ(1p) ✨

okay so bestie, welcome to the User Contributed Perl Documentation for bp_extract_feature_seq — yes the manual page title is genuinely abbreviated like that, that's just how it's filed, don't @ me 💅

🌸 NAME 🌸

bp_extract_feature_seq — extract the corresponding sequence for a specified feature type 🧬✨

🎀 SYNOPSIS 🎀

bp_extract_feature_seq [--format FORMAT] [--feature CDS] [--output FILE]
[--input] FILE

🦋 DESCRIPTION 🦋

This script will extract the sequence for all the features you specify. that's it, that's the whole vibe, it does one thing and it does it iconically 💖

💅 OPTIONS 💅

  • -i, --input — specifies the sequence file to be read. your source material, the main character of the operation 📖
  • --format — format of the file specified by --input. if you don't give it one, it will try to guess the correct format from the file extension 🔍 (she's intuitive like that, but guessing is guessing, so ngl be ready to just tell her)
  • --feature — feature to be extracted. by default, it extracts the CDS feature. so if you say nothing, CDS is what you get 🧬
  • -o, --output — file where the extracted features will be saved. if not specified, STDOUT is used. no file? she just yells it straight at your terminal, periodt 🫶

🌈 FEEDBACK 🌈

💌 Mailing Lists

User feedback is an integral part of the evolution of this and other Bioperl modules. fr fr, they genuinely want to hear from you 💖 Send your comments and suggestions preferably to the Bioperl mailing list. Your participation is much appreciated. 🥹

L<bioperl-l@bioperl.org>                  - General discussion
L<http://bioperl.org/wiki/Mailing_lists>  - About the mailing lists

🐛 Reporting Bugs

Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via email or the web:

L<https://github.com/bioperl/bioperl-live/issues>
heads up bestie — if you found a bug, tell them, don't just suffer in silence 😭 they literally cannot fix what they don't know about

👑 AUTHOR 👑

Jason Stajich <jason-at-bioperl-dot-org>

and that's the whole page, you ate that 💅 this was perl v5.32.1, dated 2021-08-15 — so if you're reading this from the future, hey, the docs are vintage and the vibes are timeless 🎀✨🦋

📦 where this page comes from