SEQTAX(1e)

📦 version 6.6.0, in debian bookworm, debian trixie, ubuntu jammy, ubuntu noble, ubuntu questing, ubuntu resolute, ubuntu stonking

💖 SEQTAX 💖

okay so bestie, welcome to the seqtax page from the EMBOSS Manual for Debian (that's the 1e manual section, iykyk). Pull up a chair, we're gonna extract some taxonomy ids and it's gonna be iconic.

✨ NAME ✨

seqtax — Extract a list of taxonomy ids from a sequence entry

🦋 SYNOPSIS 🦋

seqtax -sequence sequence -outfile outfile [-html boolean]

seqtax -help

🌸 DESCRIPTION 🌸

seqtax is a command line program from EMBOSS (that's “the European Molecular Biology Open Software Suite” — slay). It's part of the "Ontology:Taxonomy" command group(s). So like, it runs in your terminal, you feed it a sequence entry, and it hands you back the taxonomy ids. Simple. Clean. Gorgeous. ✨

💅 OPTIONS 💅

🌈 Input section

  • -sequence sequence — your input sequence entry, bestie. This is what we're reading from. 👑

🎀 Required section

(no options live here, she's just vibing, but she exists)

🧚 Additional section

(also empty, also valid, also beautiful)

💜 Advanced section

(yeah this one's empty too — sometimes the most advanced thing you can do is say nothing)

🍓 Output section

  • -outfile outfile — This is the file of NCBI taxonomy IDs that were found in the input sequnce entry. That's literally the whole point of this program. Write those ids somewhere. 📝

⭐ Html section

  • -html boolean — If you are sending the output to a file, this will format it for displaying as a table in a WWW document. Default value: N. So like, leave it alone unless you want a table for the web, no cap.

💀 BUGS 💀

Found a bug? Not the vibe, but okay, we handle it. Bugs can be reported to the Debian Bug Tracking system (http://bugs.debian.org/emboss), or directly to the EMBOSS developers (http://sourceforge.net/tracker/?group_id=93650&atid=605031). Go tell them, they wanna know. 🫶

🔥 SEE ALSO 🔥

seqtax is fully documented via the tfm(1) system. So if you need the deep lore, that's where it lives. 👑

👑 AUTHOR 👑

Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>

  • Wrote the script used to autogenerate this manual page. Main character energy fr fr. 💅

This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be redistributed under the same terms as EMBOSS itself. Periodt. ✨

and that's the whole page, bestie — this one came straight outta EMBOSS 6.4.0, dated 05/11/2012, so it's vintage but she still serves 💖 mwah, go extract those taxonomy ids 🦋

📦 where this page comes from