PSIPHI(1e)

📦 version 6.6.0, in debian bookworm, debian trixie, ubuntu jammy, ubuntu noble, ubuntu questing, ubuntu resolute, ubuntu stonking

💖 PSIPHI 💖

okay bestie, so this is psiphi — it lives in the EMBOSS Manual for Debian section 1e, and it is literally the girl who calculates phi and psi torsion angles from protein coordinates. ✨ angles! from coords! she's doing the math so you don't have to 🫶

✨ NAME ✨

psiphi — Calculates phi and psi torsion angles from protein coordinates

🌸 SYNOPSIS 🌸

psiphi -infile infile -chainnumber integer -startresiduenumber integer
       -finishresiduenumber integer -outfile report

psiphi -help

🦋 DESCRIPTION 🦋

psiphi is a command line program from EMBOSS (“the European Molecular Biology Open Software Suite”). It is part of the "protein:3D structure" command group(s).

so yeah, she's a certified EMBOSS girlie and she hangs out with the 3D structure crew 💅

🎀 OPTIONS 🎀

💜 Input section

  • -infile infile — this is where you hand her the input file, bestie. no file, no angles 🙈

⭐ Required section

  • -chainnumber integer — which chain are we vibing with. Default value: 1
  • -startresiduenumber integer — where the residue range kicks off. Default value: 1
  • -finishresiduenumber integer — where the residue range wraps up. Default value: 1

🧚 Advanced section

okay so… this section is literally empty. nothing in here. she's not hiding anything, there's just no advanced options. iconic minimalism, honestly 💀

🍓 Output section

  • -outfile report — where the report gets written. she needs somewhere to spill the tea 📝

😭 BUGS 😭

Found a bug? No gatekeeping, please report it. Bugs can be reported to the Debian Bug Tracking system (http://bugs.debian.org/emboss), or directly to the EMBOSS developers (http://sourceforge.net/tracker/?group_id=93650&atid=605031).

not me asking you to file the bug report… do it tho, the devs wanna know 🫶

👑 SEE ALSO 👑

psiphi is fully documented via the tfm(1) system.

so if you want the deep lore, that's where it's at, iykyk 💖

🌈 AUTHOR 🌈

Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>

  • Wrote the script used to autogenerate this manual page.

This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be redistributed under the same terms as EMBOSS itself.

and that's the whole page, bestie 🎀 she's EMBOSS 6.4.0, dated 05/11/2012, and she ate. periodt. 💅💖✨

📦 where this page comes from