PRIMERSEARCH(1e)

📦 version 6.6.0, in debian bookworm, debian trixie, ubuntu jammy, ubuntu noble, ubuntu questing, ubuntu resolute, ubuntu stonking

💅 PRIMERSEARCH — the 1e girlies know

okay so bestie, welcome to primersearch, a page from the EMBOSS Manual for Debian. She's a little command line program, she's iconic, and she has one job: hunting down primer pairs in your DNA. Let's get into it 🧚✨

✨ NAME ✨

primersearch — literally just Search DNA sequences for matches with primer pairs. That's the whole vibe. That's her. 🎀

🌸 SYNOPSIS 🌸

primersearch -seqall seqall -infile infile -mismatchpercent integer
             -outfile outfile

primersearch -help

so you run her with all those flags, or you hit her with -help if you're feeling lost. no shame in that. 🫶

🦋 DESCRIPTION 🦋

primersearch is a command line program from EMBOSS — that's "the European Molecular Biology Open Software Suite" — no cap. 💜

She's part of the "Nucleic:Primers" command group(s). So if you're in your primer era, she's in the group chat. 👑

💖 OPTIONS 💖

🌈 Input section

  • -seqall seqall — your sequence input, bestie. Hand her the sequences here.
  • -infile infile — the file she reads your primer pairs from. yes, that's the input file. groundbreaking, i know 💅

⭐ Required section

  • -mismatchpercent integer — required, meaning you cannot skip her. this is how much mismatch you're allowing, as an integer. no default energy here, you must provide it. periodt.

🍓 Output section

  • -outfile outfile — where the results go. your output file. that's it. that's the whole girl. ✨

💀 BUGS 💀

found a bug? 😭 not ideal but it happens. Report it to the Debian Bug Tracking system at http://bugs.debian.org/emboss, or slide directly into the EMBOSS developers' DMs at http://sourceforge.net/tracker/?group_id=93650&atid=605031. they wanna know, fr fr. 🐛

🔥 SEE ALSO 🔥

primersearch is fully documented via the tfm(1) system. go look, iykyk. 👀

👑 AUTHOR 👑

Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>

  • Wrote the script used to autogenerate this manual page. main character energy, honestly. 🫡

This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be redistributed under the same terms as EMBOSS itself. 📜

ngl, that's the whole page. go search some primers, bestie, you got this 💪💖

EMBOSS 6.4.0 · 05/11/2012 — yeah she's a vintage queen from the EMBOSS 6.4.0 era, dated 05/11/2012, and she still slays. 🦋⭐

📦 where this page comes from