PRETTYSEQ(1e)

📦 version 6.6.0, in debian bookworm, debian trixie, ubuntu jammy, ubuntu noble, ubuntu questing, ubuntu resolute, ubuntu stonking

✨ NAME ✨

prettyseq — bestie, this one writes a nucleotide sequence and its translation straight to a file 💖

It's a command line program from EMBOSS ("the European Molecular Biology Open Software Suite"), and it hangs out in the "Nucleic:Translation,Display" command group(s). Yes, the manual page you're holding is from the EMBOSS Manual for Debian, and we are SO glad you're here 🫶

🌸 SYNOPSIS 🌸

okay so here's the whole vibe in one go, no skips:

prettyseq -sequence sequence -range range [-table list] [-ruler boolean]
          [-plabel boolean] [-nlabel boolean] -width integer
          -outfile outfile

prettyseq -help

Like, -sequence, -range, -width and -outfile are the non-negotiables. The bracketed ones are the optional little accessories 🎀 And -help is always there for you when you just need answers.

🦋 DESCRIPTION 🦋

prettyseq is a command line program from EMBOSS — "the European Molecular Biology Open Software Suite", iconic name, no notes — and it belongs to the "Nucleic:Translation,Display" command group(s). It writes a nucleotide sequence and its translation to a file. That's the whole job. It does it gorgeously. Periodt. 💅

👑 OPTIONS 👑

🍓 Input section

  • -sequence sequence — this is the sequence you're feeding in, bestie. Gotta have it.

💜 Required section

  • -range range — the range of the sequence you want to work with. Default value: $(sequence.begin)-$(sequence.end) — so like, the whole thing by default, obviously.

🌈 Additional section

  • -table list — the translation table, as a list.
  • -ruler boolean — the ruler. Default value: Y (yes, we're doing rulers, it's giving organized ✨)
  • -plabel boolean — protein label. Default value: Y
  • -nlabel boolean — nucleotide label. Default value: Y

🧚 Advanced section

  • -width integer — how wide the output is. Default value: 60

⭐ Output section

  • -outfile outfile — where it all goes. The file. The destination. The moment 💖

💀 BUGS 💀

Not me having to tell you this, but if something's broken, bugs can be reported to the Debian Bug Tracking system (<http://bugs.debian.org/emboss>), or directly to the EMBOSS developers (<http://sourceforge.net/tracker/?group_id=93650&atid=605031>). They want to know. Fr fr. 🙈

🎀 SEE ALSO 🎀

prettyseq is fully documented via the tfm(1) system. Go read it, iykyk 📖

💖 AUTHOR 💖

Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org> — they wrote the script used to autogenerate this manual page. Kings. Queens. Legends. 👑

This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be redistributed under the same terms as EMBOSS itself. So like, respect the terms bestie 💅

and that's the whole page, no cap. This was EMBOSS 6.4.0, dated 05/11/2012, from the EMBOSS Manual for Debian — thanks for reading, you ate, go translate something pretty 🌈💖✨
📦 where this page comes from