LIBSCANOUT(1e)

📦 version 0.1.660, in debian bookworm, debian trixie, ubuntu jammy, ubuntu noble, ubuntu questing, ubuntu resolute, ubuntu stonking

💖 LIBSCANOUT 💖

okay bestie, welcome to the EMBOSS corner of the manual-page universe — this one lives in section 1e of the manual, and it's literally the moment your DHF file gets its whole life together. ✨

✨ NAME ✨

libscanout — reads a DHF file and writes out a file of the top-scoring Classes, Folds and Superfamilies. 🦋

🌸 SYNOPSIS 🌸

libscanout -dhfinfile infile -outfile outfile

libscanout -help

💅 DESCRIPTION 💅

libscanout is a command line program from EMBOSS (“the European Molecular Biology Open Software Suite”). No cap. It's part of the "Protein:3D Structure" command group(s). 🧚

🎀 OPTIONS 🎀

💖 Input section 💖

  • -dhfinfile infile — this one tells the program where your DHF file (domain hits file) is at, and yes it's the input, bestie. A 'domain hits file' contains database hits (sequences) with domain classification information, in FASTA or EMBL formats. The hits are relatives to a SCOP or CATH family and are found from a search of a sequence database. Heads up: files containing hits retrieved by PSIBLAST are generated by using SEQSEARCH. 👑

💜 Required section 💜

(nothing listed here — the vibe is just... required, iykyk) 🙈

🌈 Output section 🌈

  • -outfile outfile — this one specifies the location of the summary file (output). The summary file contains lists of domain Classes, Superfamilies and Families rank-ordered on the basis of score (highest-scoring first). It's giving leaderboard energy. 🔥

💀 BUGS 💀

Found a bug? Not me being dramatic, but please report it 🫶 — bugs can be reported to the Debian Bug Tracking system (http://bugs.debian.org/emboss), or directly to the EMBOSS developers (http://sourceforge.net/tracker/?group_id=93650&atid=605031).

🦋 SEE ALSO 🦋

libscanout is fully documented via the tfm(1) system. go read it, bestie, it's iconic. ⭐

👑 AUTHOR 👑

Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>

  • Wrote the script used to autogenerate this manual page. slay. 💅

This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be redistributed under the same terms as EMBOSS itself. ✨

okay so that's the whole page, no skips, no shortcuts, every flag accounted for. periodt. 💖

and for the cute sign-off: this gorgeous thing came from DOMAINATRIX 0.1.0+20100721, dated 08/11/2010 🌸 — yes she's vintage, and yes she still ate. bye bestie, go score some domains 🎀🦋

📦 where this page comes from