PSCAN(1e)

📦 version 6.6.0, in debian bookworm, debian trixie, ubuntu jammy, ubuntu noble, ubuntu questing, ubuntu resolute, ubuntu stonking

💖 PSCAN(1e) 💖

okay so bestie, we're diving into the EMBOSS Manual for Debian page for pscan, and it's lowkey iconic. it's a command line program from EMBOSS ("the European Molecular Biology Open Software Suite") — and it lives in the "Protein:Motifs" command group(s). she scans protein sequence(s) with fingerprints from the PRINTS database. main character energy fr. 👑

✨ NAME ✨

pscan — Scans protein sequence(s) with fingerprints from the PRINTS database 🧬💅

🌸 SYNOPSIS 🌸

pscan -sequence seqall -emin integer -emax integer -outfile outfile

pscan -help

🦋 DESCRIPTION 🦋

pscan is a command line program from EMBOSS ("the European Molecular Biology Open Software Suite"). It is part of the "Protein:Motifs" command group(s). no cap, that's the whole vibe — she takes your protein sequences and scans them against the fingerprints sitting in the PRINTS database. periodt. 🌈

💜 OPTIONS 💜

🎀 Input section

  • -sequence seqall — the sequence input, and bestie, it's a seqall, so it can be one sequence or a whole lil lineup of them. 💖

🔥 Required section

  • -emin integer — the minimum value for e. Default value: 2. ✨
  • -emax integer — the maximum value for e. Default value: 20. ✨
ngl, these two are required, so don't ghost them. -emin starts at 2 and -emax caps out at 20 unless you say otherwise. 🫶

🍓 Output section

  • -outfile outfile — where your results go. she needs it, so hand it over. 💌

💀 BUGS 💀

found a bug? 😭 don't suffer in silence, report it. Bugs can be reported to the Debian Bug Tracking system (http://bugs.debian.org/emboss), or you can go directly to the EMBOSS developers (http://sourceforge.net/tracker/?group_id=93650&atid=605031). they wanna hear from you fr fr. 🙈

👑 SEE ALSO 👑

pscan is fully documented via the tfm(1) system. iykyk. 📖✨

🧚 AUTHOR 🧚

Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>

  • Wrote the script used to autogenerate this manual page. 👏

This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be redistributed under the same terms as EMBOSS itself. 🫶

and that's a wrap bestie!! this whole page is EMBOSS 6.4.0, dated 05/11/2012, straight from the Debian manual set. slay, go scan some proteins, and remember: every flag matters, no skipping. 💖🎀🦋🌸💅

📦 where this page comes from