EDAMHASINPUT(1e)

📦 version 6.6.0, in debian bookworm, debian trixie, ubuntu jammy, ubuntu noble, ubuntu questing, ubuntu resolute, ubuntu stonking

💖 EDAMHASINPUT — the manual page, but make it make sense 💖

okay bestie, listen. this is edamhasinput from the EMBOSS Manual for Debian and it's genuinely so useful once you get it. it's giving "quiet overachiever" energy. let's go. 🦋

✨ NAME ✨

edamhasinput — find EDAM ontology terms by the has_input relation. that's the whole vibe. periodt. 💅

🎀 SYNOPSIS 🎀

edamhasinput -identifier string [-namespace list] -sensitive boolean
             -subclasses boolean -obsolete boolean -edamhasinput outobo

edamhasinput -help

🌸 DESCRIPTION 🌸

so edamhasinput is a command line program from EMBOSS — and for the uninitiated, that stands for "the European Molecular Biology Open Software Suite" 🧚. no cap.

it lives in the command group(s) "Ontology:EDAM,Data retrieval:Ontology data". like, that's its whole clique. it's not a lone wolf, it's in a squad. 👑

💅 OPTIONS 💅

💖 Input section 💖

  • -identifier string — this is your main character moment. the string you're feeding in. that's it, that's the input. 🍓

🦋 Additional section 🦋

  • -namespace list — lowkey this one's important. by default all terms come back to you, like a group chat where everyone replies at once. but if you want to narrow it down, you can limit the search to one namespace, or a few of them. default value: * — yeah, the literal star, meaning "everything, bestie, don't be shy." ✨

⭐ Advanced section ⭐

  • -sensitive boolean — ok so by default the query keywords only get matched against the EDAM term names (and the synonyms, they count too). turn this on and it also matches your keywords against the EDAM term definitions, which (typically) means you get more matches. more is more sometimes. default value: N 🙈
  • -subclasses boolean — this one extends your query matches so they also pull in every term that's a specialisation (aka EDAM sub-classes) of whatever matched type you found. it's like finding your fave and then also adopting all their children. default value: N 🌈
  • -obsolete boolean — the default behaviour is to not use or return obsolete terms. (they're old, they're tired, let them rest 😭). set this and it will include all terms. default value: N

🔥 Output section 🔥

  • -edamhasinput outobo — this is where the results go. it's an outobo, so the output is an OBO file. that's your whole output situation. 🫶

💀 BUGS 💀

found a bug? no worries, it happens to the best of us. you can report them to the Debian Bug Tracking system at http://bugs.debian.org/emboss, or you can go straight to the EMBOSS developers at http://sourceforge.net/tracker/?group_id=93650&atid=605031. snitch respectfully. 💖

👑 SEE ALSO 👑

edamhasinput is fully documented via the tfm(1) system. iykyk. 📚

🌟 AUTHOR 🌟

Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>

  • wrote the script used to autogenerate this manual page. shoutout to the script. it ate. 🤖✨

this manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. it can be redistributed under the same terms as EMBOSS itself. slay, legally speaking. ⚖️🌸

and that's the whole page, bestie 🎀 — this is EMBOSS 6.4.0, dated 05/11/2012. old but iconic, and it still hits. mwah. 💅💖🦋

📦 where this page comes from