DOMAINSSE(1e)

✨ DOMAINSSE ✨

okay bestie, so this is domainsse from section 1e of the manual, and it's literally the girl who adds secondary structure records to a DCF file 💅 no cap, that's the whole job. it lives in the EMBOSS world and it's part of the "Utils:Database creation" command group(s). 🎀

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🌸 SYNOPSIS 🌸

domainsse -dcfinfile infile -dccfdir directory -dcfoutfile outfile
          -logfile outfile

domainsse -help

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🦋 DESCRIPTION 🦋

so domainsse is a command line program from EMBOSS ("the European Molecular Biology Open Software Suite"). it's part of the "Utils:Database creation" command group(s). she's a database-creation girly, periodt. ✨

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💖 OPTIONS 💖

🍓 Input section

• -dcfinfile infile — this one says which DCF file (domain classification file) you're feeding in, and yes it's the input. a "domain classification file" holds classification and other data for domains from SCOP or CATH, in DCF format (EMBL-like). those files get generated by using SCOPPARSE and CATHPARSE. and if you wanna add domain sequence information to the file, you do that by using DOMAINSEQS. 🧚
• -dccfdir directory — this is where the domain CCF files (clean coordinate files) live, and again it's input. a "clean cordinate file" contains protein coordinate and derived data for a single PDB file ("protein clean coordinate file") or a single domain from SCOP or CATH ("domain clean coordinate file"), in CCF format (EMBL-like). these files are generated by using PDBPARSE (for PDB files) or DOMAINER (for domains), and they contain "cleaned-up" data that is self-consistent and error-corrected. records for residue solvent accessibility and secondary structure get added to the file by using PDBPLUS. default value: ./ 🫶

⭐ Required section

(it's giving very minimal in here ngl, nothing listed bestie) 🙈

🌈 Advanced section

(also empty, not a single thing, iconic) 👑

💜 Output section

• -dcfoutfile outfile — the name of the DCF file (domain classification file) that comes out the other side, with secondary structure records on it (output). a "domain classification file" contains classification and other data for domains from SCOP or CATH, in DCF format (EMBL-like). the files are generated by using SCOPPARSE and CATHPARSE. domain sequence information can be added to the file by using DOMAINSEQS. 💖
• -logfile outfile — this is the name of the DOMAINSSE log file. default value: domainsse.log 📝

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😭 BUGS 😭

found a bug? don't suffer in silence bestie, report it to the Debian Bug Tracking system (http://bugs.debian.org/emboss), or slide directly into the EMBOSS developers' DMs (http://sourceforge.net/tracker/?group_id=93650&atid=605031). 🐛

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🔥 SEE ALSO 🔥

domainsse is fully documented via the tfm(1) system. go read that if you want the full lore, iykyk. 📚

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👑 AUTHOR 👑

Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>

• Wrote the script used to autogenerate this manual page. (ty for your service 🫡)

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🌸 COPYRIGHT 🌸

This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be redistributed under the same terms as EMBOSS itself.

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and that's the whole page, bestie!! this was DOMAINATRIX version 0.1.0+20100721, dated 08/11/2010. she's a lil vintage but she ate 💅✨ mwah, go add those secondary structure records, you got this 🎀