CUSP(1e)

📦 version 6.6.0, in debian bookworm, debian trixie, ubuntu jammy, ubuntu noble, ubuntu questing, ubuntu resolute, ubuntu stonking

👑 CUSP — like, the codon usage table generator, bestie

okay so this is cusp, and it lives in the EMBOSS Manual for Debian (that's section 1e of the manual pages, iykyk). Buckle up 💖

✨ NAME ✨

cusp — bestie, it creates a codon usage table from nucleotide sequence(s). That's the whole vibe. 🌸

✨ SYNOPSIS ✨

okay so here's literally how you run it:

cusp -sequence seqall -outfile outfile

and if you're lost and just want help:

cusp -help

that's it. that's the whole thing. slay. 💅

✨ DESCRIPTION ✨

cusp is a command line program from EMBOSS — and yeah, that stands for “the European Molecular Biology Open Software Suite”, iconic name, no notes. 🧚

it's part of the "Nucleic:Codon usage" command group(s). so like, that's its little friend group. 🫶

✨ OPTIONS ✨

🌸 Input section 🌸

  • -sequence seqall — the nucleotide sequence(s) you're feeding in, bestie. that's the input. 💖

🦋 Output section 🦋

  • -outfile outfile — where the codon usage table gets written. your output file. periodt. ✨

💀 BUGS 💀

found a bug? not me being the bearer of bad news but — bugs can be reported to the Debian Bug Tracking system at http://bugs.debian.org/emboss, or you can go straight to the EMBOSS developers at http://sourceforge.net/tracker/?group_id=93650&atid=605031. they want to hear from you fr fr 🙈

👀 SEE ALSO 👀

cusp is fully documented via the tfm(1) system. go look if you want the deep lore. 👑

🌈 AUTHOR 🌈

Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>

  • they wrote the script used to autogenerate this manual page. so like, credit where credit is due. 🎀

this manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. it can be redistributed under the same terms as EMBOSS itself. so, you know, same rules, same energy. ⭐

okay that's the whole page bestie, go make some codon usage tables 💅✨

EMBOSS 6.4.0 · 05/11/2012 — yeah this one's been around a minute, still eating though. 🍓 bye!! 🦋

📦 where this page comes from