XTPCPP(1)

💖 NAME 💖

okay so bestie, gather round, because this is xtpcpp — the little icon that opens your xtpcpp project file (you know, the ones with .xpip extensions 👀). that's literally the whole job. one job. she does it.

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✨ SYNOPSIS ✨

xtpcpp [options] [filename ...]

like. that's it. that's the whole invocation. slay.

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🦋 DESCRIPTION 🦋

okay so this manual page is the brief rundown of the xtpcpp software — the tl;dr version, the vibe check, if you will. it's not gonna hold your hand through every single thing, it's just here so you know what you're looking at. 💅

so what does this program actually do? bestie. it's giving MS/MS identification engine results. you load them in. and then it's a whole glow-up station for your data:

• peptide filtering — yes queen, filter them
• grouping algorithms — putting things together the way they belong
• data visualization — because numbers alone are not the moment
• peptide quantification using XICs — the math, the quantification, the drama

lowkey that's a lot for one little command. highkey iconic.

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🎀 OPTIONS 🎀

• -h | --help — shows you the detailed usage information and then dips out (exits). extremely "let me explain myself and then leave" energy. respect.
• -v | --version — prints the version of the software program. so you can go "wait which one am i running" and get a real answer. 🫶
• filename — the X!TandemPipeline project file to be opened. this is the thing you actually came here for, bestie. hand her the file. note that the synopsis says [filename ...] so she'll take more than one, and everything here is optional-looking — but no cap, the file is the whole point of the outing. 🙈

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📚 Bibliographic reference to be cited 📚

if you're out here citing this in your paper (and you should be, that's the rules 💖), this is the one, exactly as written:

Langella O, Valot B, Balliau T, Blein-Nicolas M, Bonhomme L, Zivy M. (2017) X!TandemPipeline: A Tool to Manage Sequence Redundancy for Protein Inference and Phosphosite Identification. J. Proteome Res., 2 (16) 494-503

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not me ending the page with the citation like a good student 🎓 the way that academia REQUIRES the receipt. periodt.

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okay that's the whole page, bestie 🧚 this one lives in the General Commands Manual (section 1, obviously, it's a command), and the footer has all the source/version and date deets tucked down at the bottom like always — go peek at it if you need the receipts, because i am NOT about to make up a version number, that's not the vibe. stay hydrated, filter your peptides, and may your XICs always quantify 💜✨🌸