TRANSIT(1)

📦 version 3.3.12, in debian bookworm, debian trixie, ubuntu jammy, ubuntu noble, ubuntu questing, ubuntu resolute, ubuntu stonking

💖 NAME 💖

transit — statistical calculations of essentiality of genes or genomic regions ✨

🎀 SYNOPSIS 🎀

python /usr/bin/transit <method>

🦋 DESCRIPTION 🦋

okay bestie so for commandline mode, you literally gotta use one of the known methods (or peek at the documentation if you're feeling brave and wanna add a new one, iykyk) 🫶

Analysis methods:

  • example
  • gumbel
  • binomial
  • griffin
  • hmm
  • resampling
  • tn5gaps
  • rankproduct
  • utest
  • GI
  • anova
  • zinb
  • pathway_enrichment
  • tnseq_stats
  • corrplot
  • heatmap

✨ Other functions ✨

  • normalize
  • convert
  • export

transit 3.1.0 · August 2020 — and that's the whole vibe, bestie 💅 no cap, go compute some essentiality 👑💖

📦 where this page comes from