TOFU(1)

🎀 NAME 🎀

tofu — bestie, it's literally a toolkit for tomographic data reconstruction 💖

---

✨ DESCRIPTION ✨

okay so real talk — tofu is your all-in-one bestie for tomographic data reconstruction, and the way it works is you call it like this:

tofu [-h] [--config FILE] [--version]

       {init,preprocess,flatcorrect,sinos,tomo,lamino,reco,gui,flow,ez,estimate,perf,interactive,find-large-spots,inpaint}
       ...

no cap, that's the whole vibe. 🦋

---

🌸 options 🌸

• -h, --help — shows you this help message and then dips. the classic.
• --config FILE — the file name of configuration. that's it, that's the flag 💅
• --version — prints the program's version number and exits. main character behaviour fr fr.

---

👑 Commands 👑

so here's the lineup of commands you can pass, bestie. pick your fighter:

• init — create configuration file ✨
• preprocess — run preprocessing
• flatcorrect — run flat field correction
• sinos — generate sinograms from projections 🌈
• tomo — run tomographic reconstruction
• lamino — run laminographic reconstruction
• reco — run general projection-based reconstruction for tomographic/laminographic cone/parallel beam. she does it all 💖
• gui — GUI for tomographic reconstruction 🖥️
• flow — visual flow creation
• ez — GUI for making ufo-kit data processing pipelines
• estimate — estimate center of rotation 🎯
• perf — check reconstruction performance
• interactive — run interactive mode
• find-large-spots — find large spots on images
• inpaint — inpaint images 🎀

heads up bestie: the full command set in the usage line is {init,preprocess,flatcorrect,sinos,tomo,lamino,reco,gui,flow,ez,estimate,perf,interactive,find-large-spots,inpaint} so don't come for me if you typed something else 🙈

---

and that's the whole page, periodt. 💅 this was tofu version 0.15.0, dated July 2026 — go forth and reconstruct, you icon 🫶✨🔬