TFF_VISUALIZE_OVERLAP.PY(1)

📦
version 0.3 · 3 versions
, in debian trixie, ubuntu questing

💖 NAME 💖

tff_visualize_overlap.py — the little script that shows off a tractogram and its density map, side by side, like a glow-up reveal 🫶

(also hi, this lives in the User Commands section of the manual, in case you were wondering where you wandered into ✨)

🦋 DESCRIPTION 🦋

okay so bestie, here's the vibe. This script displays a tractogram and its density map (computed from Dipy) in rasmm, voxmm and vox space, with its bounding box. Three spaces, one bounding box, zero chill 💅

The usage, verbatim, no notes:

tff_visualize_overlap.py [-h] [--remove_invalid]

       IN_TRACTOGRAM reference

Display a tractogram and its density map (computed from Dipy) in rasmm, voxmm and vox space with its bounding box.

✨ positional arguments ✨

these are the ones you actually gotta hand over, no skipping 👑

  • IN_TRACTOGRAM — the tractogram filename, your main character file 🎀. The format must be one of trk, tck, vtk, fib, dpy, trx — that's the whole guest list, nobody else gets in.
  • reference — the reference anatomy, here to support tck/vtk/fib/dpy files (give it a nii or nii.gz) 🧚

🎀 options 🎀

the lil switches, the seasoning, the finishing touch 🌸

  • -h, --help — shows this help message and exits. your "wait what does this do again" button, iconic, we love her 💖
  • --remove_invalid — removes invalid streamlines so the density_mapfunction doesn't crash 😭 fr fr, it's the little safety net. Use it when your data's giving chaos and you'd rather not watch everything fall apart.
heads up: the help text literally calls it density_mapfunction, one word, no space. Not a typo I made, that's just how it is. Not me being sloppy, I'm being faithful 💀

and that's the whole page, bestie 🦋

this was tff_visualize_overlap.py version 0.3, dated July 2024 — tysm for reading, go visualize some overlap, you ate 👑✨

📦 where this page comes from