USAGE:(1)

📦
version 0.3 · 2 versions
, in fedora 43

USAGE:(1) — the manual page, but make it 💅

okay bestie, welcome to USAGE:(1), the User Commands corner of the manual. this is the glow-up edition of the page for usage: tff_convert_dsi_studio, and yes the NAME section literally is just that. no notes. 💖

✨ NAME ✨

usage: — manual page for usage: tff_convert_dsi_studio [-h] [--remove_invalid | --keep_invalid] [-f]

🦋 SYNOPSIS 🦋

usage: tff_convert_dsi_studio [-h] [--remove_invalid | --keep_invalid]
       [-f]
IN_DSI_TRACTOGRAM IN_DSI_FA OUT_TRACTOGRAM

🌸 DESCRIPTION 🌸

so, the whole reason this script exists, bestie: it is made to fix DSI-Studio TRK files — like, the ones with unknown space/convention — so they actually play nice with TrackVis, MI-Brain, and Dipy Horizon (Stateful Tractogram). it's giving translator energy. 🫶

and then it either makes it match with an anatomy from DSI-Studio. that's the vibe. ✨

this script was tested on various datasets and worked on all of them. HOWEVER — and this is the part where i hold your hand — always verify the results, and if a specific case does not work, open an issue on the Scilpy GitHub repository. do not suffer in silence, that's not the move. 😭

WARNING: this script is still experimental. DSI-Studio evolves quickly, and results may vary depending on the data itself as well as the DSI-studio version. no cap, check your outputs. 💀

🎀 positional arguments 🎀

  • IN_DSI_TRACTOGRAM — the path of the input tractogram file from DSI studio (.trk).
  • IN_DSI_FA — the path of the input FA from DSI Studio (.nii.gz).
  • OUT_TRACTOGRAM — the path of the output tractogram file.

💅 options 💅

  • -h, --help — show this help message and exit. the classic. the icon. 👑
  • --remove_invalid — remove the streamlines landing out of the bounding box.
  • --keep_invalid — keep the streamlines landing out of the bounding box.
  • -f — force overwriting of the output files. (yes she will absolutely bulldoze what's already there, that's the whole point 🚨)
IN_DSI_TRACTOGRAM IN_DSI_FA OUT_TRACTOGRAM
tff_convert_dsi_studio: error: the following arguments are required: IN_DSI_TRACTOGRAM, IN_DSI_FA, OUT_TRACTOGRAM

and that's the page, bestie 💖 it comes to you courtesy of usage: tff_convert_dsi_studio... and it's dated September 2025, filed under USAGE:(1). slay, go fix those tractograms, and remember: verify your results. periodt. ✨🧚

📦 where this page comes from