SURANKCO-PREDICTION(1)

💖 SURANKCO-PREDICTION 💖

okay bestie, welcome to surankco-prediction — she lives in the User Commands section of the manual, and she is literally the moment where all your hard work finally pays off. 🎀

✨ NAME ✨

surankco-prediction — prediction of scores and ranking of contigs using trained random forests and contig features

like. she takes your trained forests and your contig features and she ranks the contigs. main character behavior, no cap. 👑

🌸 SYNOPSIS 🌸

surankco-prediction [options]

that's it. that's the whole vibe. you just feed her options and she goes. ✨

🦋 DESCRIPTION 🦋

Prediction of scores and ranking of contigs using trained random forests created by surankco-training(1) and contig features from surankco-feature(1).

so the pipeline is giving very much trio energy: surankco-feature(1) makes the features, surankco-training(1) makes the trained random forests, and then this one — surankco-prediction — uses both of those to predict scores and rank the contigs. it's the finale, the last episode, the slay. 💅

🎀 OPTIONS 🎀

• -f FEATURES, --features=FEATURES — point her at one surankco feature file. and bestie, listen: a correct suffix is mandatory — it has to be "*.features.txt". no suffix, no service, periodt. 🙈
• -r RANDOM.FORESTS, --random.forests=RANDOM.FORESTS — hand her a surankco random forests file, and yes it needs to be "*.RData". that's the trained-forest glow-up from surankco-training(1) right there. 🌈
• -o OUTPUT.FILENAME, --output.filename=OUTPUT.FILENAME — give her a name for the final results file. this is where your ranked contigs and scores get to live. iconic. ⭐
• -h, --help — show this help message and exit. the classic. when in doubt, ask her politely. 🫶

💜 AUTHOR 💜

This manpage was written by Andreas Tille for the Debian distribution and can be used for any other usage of the program.

ngl, quick vibe check before you run her: those suffixes are not optional. "*.features.txt" for -f and "*.RData" for -r. fr fr, she will not be flexible about it. 💀

and that's the whole page, bestie — surankco-prediction version 0.0.r5, dated March 2016. go rank some contigs, you absolute legend. 🧚💖🌸