SBE2MIPE(1)

💖 NAME 💖

okay so bestie, meet sbe2mipe.pl — it inserts SBE data into a MIPE file. that's the whole vibe. it's a Perl script, it lives in the user-contributed Perl documentation corner of the manual (section 1, iykyk), and it has one job.

🚨 CAUTION: DOES NOT WORK AT THE MOMENT!! 🚨 not me telling you this upfront but like... fr fr, it's broken right now. do not come for me.

it's based on MIPE version v1.1, periodt.

here's the tea on its arguments:

• mipe_file — the MIPE file, the main character of this whole operation 🎀
• STDIN — a tab-delimited list of data, and it has to be in exactly this order:
  1. PCR ID
  2. SNP ID
  3. SBE ID
  4. SBE oligo
  5. SBE specific
  6. SBE tail
  7. SBE strand
  8. SBE remark

eight little columns, in that order, no shuffling, no chaos. slay. ✨

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🌸 SYNOPSIS 🌸

sbe2mipe.pl my_file.mipe < my_data.txt

that's it. that's the whole invocation. MIPE file as the argument, data piped in from a file on STDIN, and off you go. 💅

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🦋 ADDITIONAL INFO 🦋

want more lore? go look at:

http://mipe.sourceforge.net

that's where the MIPE situation lives. 🌈

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👑 AUTHOR 👑

this icon was written by Jan Aerts (jan.aerts@bbsrc.ac.uk). give them their flowers. 💐

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and that's the page, bestie! this doc came to you via perl v5.32.1 and it's dated 2021-02-21. go forth and... maybe wait until the script actually works, no cap. 😭💜