RUN_TIPP_TOOL.PY(1)

💖 RUN_TIPP_TOOL.PY — bestie edition 💖

okay so real talk, this is run_tipp_tool.py, it lives in section 1 of the manual (User Commands, we love a classic), and it's the little helper script that takes your classification file and turns it into a profile. no cap, that's literally the whole job. it's giving "glorified file converter" but in the best way possible 🫶

---

✨ NAME ✨

run_tipp_tool.py — a helper tool that converts a classification file into a profile. that's it, that's the gig 💅

---

🌸 DESCRIPTION 🌸

here's how you're supposed to call her:

usage: run_tipp_tool.py [-h] [-g GENE] [-o OUTPUT] [-d OUTPUT_DIR] [-i INPUT] [-t THRESHOLD]

and what does she do? she performs various tools for TIPP. that's the official word. multiple tools. various ones. for TIPP. she's a whole multitasker, main character energy fr fr ✨

🎀 optional arguments 🎀

• -h, --help — shows this help message and then dips. exit stage left. bye 👋
• -g GENE, --gene GENE — use GENE's reference package. tell her which gene's package you want and she'll go get it 🧬
• -o OUTPUT, --output OUTPUT — output files with prefix OUTPUT. [default: output] — so if you don't say anything, she's naming everything output, iconic of her honestly
• -d OUTPUT_DIR, --outdir OUTPUT_DIR — output to the OUTPUT_DIR directory. ⚠️ full-path required ⚠️ like, the WHOLE path bestie, don't be shy with it. [default: .] so she'll just vibe in the current directory if you don't tell her otherwise
• -i INPUT, --input INPUT — the input file. ⚠️ full-path required ⚠️ again, full path, no shortcuts. this is the _classification.txt file you get from running run_tipp.py 🍓
• -t THRESHOLD, --threshold THRESHOLD — threshold for classification. [default: 0.95] — she's strict by default, she has standards 💅

side note bestie: -d and -i both want a full path. not a relative one, not a "it's right there in my folder" one. the full one. iykyk 😭

---

🦋 SEE ALSO 🦋

run_tipp.py(1) — yeah, the big sibling. if you haven't run that one yet you probably don't have a _classification.txt to feed this one, so maybe start there bestie 🌈

---

anyway that's the whole page!! 💜 this one's run_tipp_tool.py, September 2021, that's the version-and-date tea. go forth and convert your classification file into a profile, you absolute legend 👑✨🦋🎀💖