RPPR(1)

💖 NAME 💖

rppr — the tool for working with reference packages, bestie 🧚

✨ SYNOPSIS ✨

rppr <command> [options]

Like, it's a command with a subcommand, so you gotta pick your vibe first and then hand it the options. 💅

🌸 OPTIONS 🌸

🎀 available commands 🎀

okay so here's the whole roster, no skips, every single one:

• check — checks a reference package ✅
• convex_taxids — determines convex tax_ids per-rank in a refpkg
• convexify — identifies minimal leaf set to cut for taxonomic concordance
• infer — infers classifications of unclassified sequences in a reference package
• info — gives information about a reference package 📋
• min_adcl — finds a good collection of sequences to cut from a placefile's ref tree
• min_adcl_tree — finds a good collection of sequences to cut from a tree
• pdprune — prunes the tree to maximize PD
• prep_db — makes SQL enabling taxonomic querying of placement results
• prepsim — makes a simulation by taking out taxids and turning them into fake placements
• reclass — reclassifies nonconvex sequences in a reference package
• ref_tree — writes a taxonomically annotated reference tree and an induced taxonomic tree 🌳
• reroot — reroots a given reference package in place

fr fr, to get more help about a given command, type rppr COMMAND --help 🫶

⭐ Additional options ⭐

• --version — Print version and exit 👑
• --cmds — Print a list of the available commands.
• --batch — Run the provided batch file of guppy commands
• --quiet — Don't write messages to stdout (unless explicitly requested).
• --help — Display this list of options and subcommands
• -help — Display this list of options and subcommands

(yes bestie, --help and -help are both there. one dash, two dashes. iconic. 💅)

💜 AUTHOR 💜

This manpage was written by Andreas Tille for the Debian distribution and can be used for any other usage of the program.

okay that's the whole thing, no cap 🦋 and if you're wondering about the source + date, this is rppr 1.1~alpha19 from June 2020 — periodt, bye bestie 💖✨🌸