REFORMAT_OUTPUT(1)

💖 REFORMAT_OUTPUT 💖

okay bestie, welcome to the reformat_output page — that's section 1 of the User Commands manual, if we're being official about it. pull up a chair, grab a boba, this one's short and sweet. 🍓

✨ NAME ✨

reformat_output — she reformats output so it's way easier to read as tsv. that's it. that's the whole job. no cap. 💅

🌸 SYNOPSIS 🌸

hits_to_matrix.pl -k <filtered_kmers.txt> -p <pheno_file>

🦋 DESCRIPTION 🦋

so basically? reformat_output takes your output and reformats it for easier reading as tsv. it's giving "make it make sense" energy fr fr.

and where does all that pretty tsv go? stdout. it prints to stdout. that's the whole vibe. 🌈

👑 OPTIONS 👑

💜 Required

these ones? not optional. you NEED them. periodt.

• -k, --kmers — your filtered significant kmers, exactly as they come out of seer + filter_seer. like, that specific pipeline output, bestie, don't just toss anything in there. ✨
• -p, --pheno — the phenotype file that seer used. same one. that one right there. 🎀

🫶 Optional

• -h, --help — displays this message! iconic behaviour honestly. when you're lost, she's there. 😭💖

⭐ AUTHOR ⭐

this manpage was written by Andreas Tille for the Debian distribution, and — love this for us — it can be used for any other usage of the program. so versatile. we stan. 👑

okay that's the whole page, no notes. 💀

signing off with the receipts: this is reformat_output version 1.1.2, dated March 2017. go forth and reformat, bestie. mwah. 💅🌸✨