RAGOUT-MAF2SYNTENY(1)

👑 RAGOUT-MAF2SYNTENY 👑

okay bestie, gather round, because today we're talking about ragout-maf2synteny — that's the Reference-Assisted Genome Ordering UTility, and yes the acronym is giving exactly what it needs to give. it lives in the ragout-maf2synteny section 1 of the manual, so like... user commands, the real ones. 💅

✨ NAME ✨

ragout-maf2synteny — Reference-Assisted Genome Ordering UTility 🧬✨

🌸 SYNOPSIS 🌸

maf2synteny [-o out_dir] [-s simpl_params] [-m block_sizes] maf_file

like. that's it. that's the whole vibe. 🫶

🎀 OPTIONS 🎀

💖 positional arguments: 💖

• maf_file — the path to your maf file, bestie. the whole reason we're here. hand it over. 🍓

🦋 optional arguments: 🦋

• -o out_dir — path to the output directory. where your little treasures get dropped. [default = .] so if you say nothing, it just chills in the current dir, no cap. 📁
• -s simpl_params — path to a file with custom simplification parameters. [default = not set] so by default there's nothing custom going on, it's just doing its thing. 🧚
• -b block_sizes — a comma-separated list of synteny block scales. [default = 5000] yep, five thousand, that's the one. 🔥

ngl the synopsis up there says -m block_sizes and this options list says -b block_sizes and I'm literally just the messenger 💀 I am not editing a single character of either, that's above my pay grade, I report what the page says, periodt.

💜 AUTHOR 💜

this manpage was written by Andreas Tille for the Debian distribution, and it can be used for any other usage of the program. icon behavior, honestly. 👑

and that's the whole page, babe. you ate. go run it. 💅✨

🌈 ragout-maf2synteny 2.1.1 · February 2019 · that's the version and the date, mwah, bye bestie 🫶🎀