PYBEL(1)

💅 pybel — the manual page, but make it cute

okay bestie, so this is the manpage for pybel, aka the ✨Command line interface for PyBEL✨. It lives in the User Commands section of the manual (section 1, iykyk). Let's get into it 🫶

🌸 NAME 🌸

pybel — Command line interface for PyBEL 💖

✨ SYNOPSIS ✨

pybel [OPTIONS] COMMAND [ARGS]...

literally that's the whole vibe. options first, then a command, then whatever args that command wants 🎀

🦋 DESCRIPTION 🦋

PyBEL is a pure Python package for parsing and handling biological networks encoded in the Biological Expression Language (BEL) version 2. no cap, that's the whole point of it 💅

it also facilitates data interchange between common formats and databases such as NetworkX, JSON, CSV, SIF, Cytoscape, CX, NDEx, SQL, and Neo4J. it's giving ✨interoperability queen✨

💖 OPTIONS 💖

• --version — shows the version and then dips out. bye 👋
• -c, --connection TEXT — the database connection string 🗄️ [default: sqlite:////home/andreas/.pybel/pybel_0.14.0_cache.db]
• --help — shows this message and exits. the classic "help me pls" move 😭

🎀 Commands: 🎀

like, the actual things you can do:

• compile — compile a BEL script to a graph. ✨
• insert — insert a graph to the database. 🗄️
• machine — get content from the INDRA machine and upload to BEL Commons. 🤖
• manage — manage the database. 👑
• neo — upload to neo4j. 🦋
• post — upload a graph to BEL Commons. 📮
• serialize — serialize a graph to various formats. 🔄
• summarize — summarize a graph. 📝
• warnings — list warnings from a graph. ⚠️

🌈 AUTHOR 🌈

this manpage was written by Andreas Tille for the Debian distribution and can be used for any other usage of the program 💜 fr fr, he said "use it however, bestie".

and that's a wrap on pybel! this was pybel 0.14.5, dated March 2020, straight out of the manpage vaults 📅✨ go forth and compile some BEL, you absolute icon 🫶💅