PXSSTAT(1)

📦
version 1.3.2 · 3 versions
, in debian trixie, ubuntu questing, ubuntu resolute, ubuntu stonking

✨ pxsstat — the multinomial alignment test statistics girlie 💅

okay bestie, so pxsstat is a User Command (manual section 1) and she is literally here to calculate multinomial alignment test statistics for you. no cap. 🦋

🌸 NAME 🌸

pxsstat — calculate multinomial alignment test statistics

🎀 SYNOPSIS 🎀

pxsstat [OPTIONS]...

✨ DESCRIPTION ✨

So what does she actually do? She calculates multinomial alignment test statistics. 💖 That's the whole vibe.

Right now she only calculates the test statistic from Bollback (2002) MBE — like, that's the one thing on the menu, and she is obsessed with it. ✨

And she's flexible fr fr: she'll take fasta, fastq, phylip, and nexus formats, either from a file or straight from STDIN. feed her however you want, she eats. 🍓

💅 OPTIONS 💅

  • -s, --seqf=FILE — input seq file, STDIN otherwise. so if you don't hand her a file she'll just read from STDIN, main character energy. 🌈
  • -o, --outf=FILE — output sequence file, STOUT otherwise. 👑
  • -h, --help — display this help and exit. the classic. the icon. 🫶
  • -V, --version — display version and exit. 🎀
  • -C, --citation — display phyx citation and exit. she wants her credit, and honestly? she deserves it. ⭐

📚 CITATION 📚

if you use her, cite her bestie, it's the rules:

Brown, Joseph W., Joseph F. Walker, and Stephen A. Smith. 2017. Phyx: phylogenetic tools for unix. Bioinformatics 33(12): 1886-1888. <https://doi.org/10.1093/bioinformatics/btx063>.

👑 AUTHOR 👑

Written by Joseph W. Brown

😭 REPORTING BUGS 😭

found a bug? not the vibe, but okay, tell the devs:

Report bugs to: <https://github.com/FePhyFoFum/phyx/issues>

phyx home page: <https://github.com/FePhyFoFum/phyx>

Copyright © 2017-2024 FePhyFoFum License GPLv3

and that's the whole page, bestie. this is pxsstat version 1.3.1, dated June 2024 — go forth and calculate those statistics, you absolute legend. slay. 💅✨🦋

📦 where this page comes from