PXS2FA(1)

💖 PXS2FA 💖

okay bestie, so this little icon is pxs2fa — it lives in the User Commands section of the manual (that's the (1) bit, iykyk), and it is here to convert your seqfiles from nexus, phylip, and fastq over to fasta. glow-up for your data, fr fr.

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✨ SYNOPSIS ✨

pxs2fa [OPTIONS]...

that's it. that's the whole vibe. options in, fasta out. 🦋

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🌸 DESCRIPTION 🌸

Convert seqfiles from nexus, phylip, fastq to fasta. that's the whole job and she does it flawlessly, no cap.

and the way that your data can come from a file or from STDIN? flexible queen behavior. 💅

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🎀 OPTIONS 🎀

• -s, --seqf=FILE — the input sequence file, bestie. if you don't give her one, she reads from STDIN instead. 🫶
• -u, --uppercase — export characters in UPPERCASE. loud and proud, main character energy, periodt.
• -o, --outf=FILE — the output sequence file. and if you skip it? it goes to STOUT instead. 👑
• -h, --help — displays this help and exits. your girl is helpful. 💖
• -V, --version — displays the version and exits. know who you're working with. ✨
• -C, --citation — displays the phyx citation and exits. cite your sources, that's academic bestie etiquette. 🎓

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📚 CITATION 📚

Brown, Joseph W., Joseph F. Walker, and Stephen A. Smith. 2017. Phyx: phylogenetic tools for unix. Bioinformatics 33(12): 1886-1888. https://doi.org/10.1093/bioinformatics/btx063.

not me reminding you to cite the tools you use 😭 it's giving responsible researcher, and we love that for you.

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👑 AUTHOR 👑

Written by Stephen A. Smith (blackrim), Joseph W. Brown

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🐛 REPORTING BUGS 🐛

found a bug? spill it here, bestie:

• Report bugs to: <https://github.com/FePhyFoFum/phyx/issues>
• phyx home page: <https://github.com/FePhyFoFum/phyx>

no gatekeeping bugs. tell the devs, they wanna know. 🙈

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💜 COPYRIGHT 💜

Copyright © 2013-2024 FePhyFoFum License GPLv3

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and that's the whole page, babe 🎀 this was pxs2fa 1.3.1, dated June 2024 — go convert something pretty. 🌈⭐🦋