PXFQFILT(1)

📦
version 1.3.2 · 3 versions
, in debian trixie, ubuntu questing, ubuntu resolute, ubuntu stonking

💖 PXFQFILT 💖

okay bestie, say hi to pxfqfilt, a lil User Commands icon living in section 1 of your manual. she's here to filter fastq files by mean quality, and honestly? she ate. ✨

🌸 NAME 🌸

pxfqfilt — filter fastq files by mean quality

🦋 SYNOPSIS 🦋

pxfqfilt [OPTIONS]...

✨ DESCRIPTION ✨

Filter fastq files by mean quality. no cap, that's the whole job and she does it flawlessly. 💅

Data can be read from a file or from STDIN — your choice, your vibe, main character energy either way. 🎀

💅 OPTIONS 💅

  • -m, --mean=VALUE — mean value under which seqs are filtered. like, anything hanging out under this number? filtered. bye. 👋
  • -s, --seqf=FILE — input sequence file, STDIN otherwise. she'll read from a file if you hand her one, otherwise she's just gonna sit there and read from STDIN. 🙈
  • -o, --outf=FILE — output sequence file, STOUT otherwise. (yes, it literally says STOUT. we are not fixing it. we are simply living with it. 🍓)
  • -h, --help — display this help and exit. your little escape hatch, bestie. 🫶
  • -V, --version — display version and exit. she'll tell you exactly who she is. 👑
  • -C, --citation — display phyx citation and exit. give credit where credit is due, periodt. 🌈

📚 CITATION 📚

Brown, Joseph W., Joseph F. Walker, and Stephen A. Smith. 2017. Phyx: phylogenetic tools for unix. Bioinformatics 33(12): 1886-1888. https://doi.org/10.1093/bioinformatics/btx063.

cite her or it's giving plagiarism, and that is NOT the vibe. 😭

🌟 AUTHOR 🌟

Written by Stephen A. Smith (blackrim)

🐛 REPORTING BUGS 🐛

Report bugs to: <https://github.com/FePhyFoFum/phyx/issues>

phyx home page: <https://github.com/FePhyFoFum/phyx>

found a bug? tell the internet, not your group chat. the issue tracker is literally right there. 🔥

Copyright © 2013-2024 FePhyFoFum License GPLv3

and that's the whole page, bestie!! 💜 this was pxfqfilt version 1.3.1, dated June 2024, and it's genuinely so iconic. go filter some fastq files, slay, and remember: the manual name goes up top, the version and date go down here, and every single detail stayed exactly where it belongs. no cap. 🦋✨🎀

📦 where this page comes from