PXCONSQ(1)

📦
version 1.3.2 · 3 versions
, in debian trixie, ubuntu questing, ubuntu resolute, ubuntu stonking

💖 PXCONSQ 💖

okay so bestie, welcome to pxconsq — it's a lil user command that computes a consensus sequence from an alignment. yes. that's the whole job. and it does it flawlessly. 🧚✨

✨ SYNOPSIS ✨

pxconsq [OPTIONS]...

🌸 DESCRIPTION 🌸

So here's the vibe: compute a consensus sequence from an alignment. 🦋

It'll happily eat fasta, phylip, and nexus formats — from a file or straight from STDIN, no drama, no complaints. 🙈

And the results? Written out in fasta format. slay. 💅

🎀 OPTIONS 🎀

  • -s, --seqf=FILE — your input sequence file, bestie. if you don't hand one over it'll just read from STDIN instead. 🌈
  • -o, --outf=FILE — where the output sequence goes. leave it out and it's STOUT otherwise. (yes that's exactly what it says, i'm not touching it, we respect the source 😭💀)
  • -h, --help — shows you this help and then dips. 👋
  • -V, --version — spills the version and exits. 👑
  • -C, --citation — drops the phyx citation and bounces. 📜✨

📚 CITATION 📚

if you use this, cite the girlies fr fr:

Brown, Joseph W., Joseph F. Walker, and Stephen A. Smith. 2017. Phyx: phylogenetic tools for unix. Bioinformatics 33(12): 1886-1888. https://doi.org/10.1093/bioinformatics/btx063.

🫶 AUTHOR 🫶

Written by Stephen A. Smith (blackrim), Joseph W. Brown. iconic behavior, honestly. 💜

🐛 REPORTING BUGS 🐛

Found a bug? not the vibe, but okay, tell them:

Report bugs to: <https://github.com/FePhyFoFum/phyx/issues>

phyx home page: <https://github.com/FePhyFoFum/phyx>

Copyright © 2013-2024 FePhyFoFum

License GPLv3

and that's the whole page, bestie!! 🎀 this was pxconsq version 1.3.1, dated June 2024, and it ate. periodt. 💅✨🦋

📦 where this page comes from