PROKKA-CLUSTERS_TO_HMM(1)

💖 PROKKA-CLUSTERS_TO_HMM 💖

ok so this is prokka-clusters_to_hmm, and it lives in section 1 of the manual (User Commands, bestie, we're in the big leagues 🫶). It's giving rapid annotation of prokaryotic genomes and honestly? iconic behavior.

🌸 NAME 🌸

prokka-clusters_to_hmm — rapid annotation of prokaryotic genomes ✨

🎀 SYNOPSIS 🎀

prokka-clusters_to_hmm [options]

🦋 DESCRIPTION 🦋

So like, you just run it with whatever options you need, no big dramatic setup, no positional args to memorize, it's lowkey chill like that. Here's every flag, no skips, no cuts, we are NOT gatekeeping 💅

• --help — prints this help. That's it, that's the whole job. It's the "hey bestie what does this do" button 🙈
• --verbose! — turns on verbose output. Default is '0', so like, quiet mode unless you ask for the tea. 🍓
• --dir=s — the source CLUSTERS folder. Default is '/bio/data/CLUSTERS/latest', which is where it's gonna go looking unless you tell it otherwise. 📁
• --lib=s — the library you want, like PHA, PRK, ... — you pick. Default is '' (empty, nada, nothing, a blank stare 😭).
• --outdir=s — where the .hmm files and indices get dropped. Default is '.' aka right here in your current directory, no thoughts just vibes.

fr fr, if you don't pass --dir and --lib, you're rolling with the defaults, so double-check before you blame the tool, ok? 🫶

and that's the whole page, bestie!! you ate that 💅✨

This was prokka-clusters_to_hmm 1.11, dated February 2015 — yeah she's a vintage queen 👑, but she still serves. bye mwah 💖🎀🦋