PLASMIDSPADES(1)

💖 PLASMIDSPADES(1) 💖

okay bestie, so this is plasmidspades — the plasmidSPAdes mode of the SPAdes genome assembler, and it lives in section 1 of the manual (iykyk). it's short, it's iconic, and it does exactly one thing: plasmids. let's get into it 🧬✨

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✨ NAME ✨

plasmidspades — SPAdes genome assembler (plasmidSPAdes mode) 🦋

like. that's the whole vibe. it's SPAdes, but make it plasmid.

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🌸 SYNOPSIS 🌸

plasmidspades [options] -o <output_dir>

so you call it, you throw whatever [options] you want at it, and you must give it a spot to dump the goods with -o <output_dir>. that's the output directory. no cap. 👑

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💅 DESCRIPTION 💅

plasmidspades runs SPAdes in plasmidSPAdes mode. literally that's the assignment and it ate. 💅

and here's the thing that's genuinely so chill of it: all parameters are identical to the regular SPAdes. every single one. no secret extra flags, no weird plasmid-only surprises, no "gotcha" options you have to go learn from scratch. if you already know your way around regular SPAdes, you already know your way around this. it's giving effortless. it's giving "same girl, different mode." 🫶

so like — don't go hunting for a special plasmid menu, bestie. there isn't one. the flags you know are the flags you get. 🔥

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👀 SEE ALSO 👀

• spades(1) — the main character, the original, the one this whole mode is built on 🌈

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ngl this page is short but it's perfect. no filler, no fluff, just a mode doing its job. we love a low-maintenance icon. 💀💖

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and that's the whole page, bestie!! this was PLASMIDSPADES(1) from the manual (section 1, obvi), and yeah — that exact string is also the version/source/date stamp down at the bottom, so consider it officially cited. mwah. 🎀💜 go assemble something gorgeous. ✨🧚‍♀️