PIZZLY(1)

📦
version 0.37.3 · 4 versions
, in debian bookworm, debian trixie, ubuntu noble, ubuntu questing

🍕✨ NAME ✨🍕

pizzly — okay bestie, the name is pizzly and the one-liner is also pizzly. That's it. That's the whole vibe. She's giving mystery, she's giving minimalism, she's giving "read the rest of the page if you want lore." 💅

💖 DESCRIPTION 💖

pizzly ======

Yes queen, the description literally starts with her own name and a little underline, like she's signing her own yearbook. We love a self-referential icon. 🎀 Everything you actually need is in the sections below, so keep scrolling bestie, it's all right there.

🌸 SYNOPSIS 🌸

(There's nothing here in the original, and I'm not about to invent syntax for you. Empty is empty. She's shy. 🫶)

🦋 DESCRIPTION 🦋

(Also empty in the source. Two descriptions, zero description. Very on brand. 😭)

👑 REQUIRED ARGUMENTS 👑

Bestie, you literally cannot run this without this one. She will not budge. 🙈

  • FUSION STRING — the one required thing. No default, no fallback, no mercy. You bring the fusion string, or you bring nothing. 💀

✨ OPTIONS ✨

Every single flag, exactly as she wrote them, no cap:

  • -h, --help — shows you the help message. The classic. The icon. When in doubt, ask for help. 🎀
  • --version-check BOOL — turn this OFF if you want to stop the app from notifying you about version updates. It takes one of 1, ON, TRUE, T, YES, 0, OFF, FALSE, F, and NO. Default: 1. (So yeah, by default she IS checking in on you like a good friend. Turn it off if the notifications are too much. 😌)
  • -k INTEGER — the k-mer size used in kallisto. 🧬
  • -a, --align-score INTEGER — maximum number of mismatches allowed (default: 2). Two strikes and you're out, fr fr.
  • -i, --insert-size INTEGER — maximum fragment size of the library (default: 400). 📏
  • -o, --output STRING — the prefix for your output files. Name your babies. 💖
  • -G, --gtf STRING — your annotation, in GTF format. 📝
  • -C, --cache STRING — the file for caching annotation. If it's not there yet she creates it; if it is, she reuses it from previous runs. Recycle, reduce, reuse, slay. ♻️
  • -F, --fasta STRING — the fasta reference. 🧚
  • --ignore-protein — ignore any protein coding information in the annotation. Just straight-up not looking at it. 🙈
  • --version — display version information. 💜

🌈 VERSION 🌈

Last update: pizzly version: 0.37.3 SeqAn version: 2.4.0

SeqAn version: 2.4.0

And that's the whole page, bestie!! This was pizzly version: 0.37.3, dated December 2022, and honestly? She ate. Go align something iconic. 🍕👑✨

📦 where this page comes from