MPIRUN(1)
๐ mpirun โ Open MPI (MPIRUN(1)) ๐
okay bestie, gather round, because this is the page: mpirun, mpiexec โ Execute serial and parallel jobs in Open MPI. It lives in the Open MPI manual, section 1. โจ
๐ก Note, and it's important:mpirunandmpiexecare literally synonyms for each other. Like, they are symbolic links to the same executable. Use either name and you get the exact same behavior. No cap. ๐ซถ
๐ธ SYNOPSIS ๐ธ
Single Process Multiple Data (SPMD) Model:
mpirun [ options ] <program> [ <args> ]
Multiple Instruction Multiple Data (MIMD) Model:
mpirun [ global_options ]
[ local_options1 ] <program1> [ <args1> ] :
[ local_options2 ] <program2> [ <args2> ] :
... :
[ local_optionsN ] <programN> [ <argsN> ]
okay and here's a lil detail that's lowkey iconic: in both models, calling mpirun via an absolute path name is equivalent to specifying the --prefix option with a <dir> value equal to the directory where mpirun lives, minus its last subdirectory. So:
shell$ /usr/local/bin/mpirun ...
is exactly the same as
shell$ mpirun --prefix /usr/local
same energy, bestie. ๐
๐ QUICK SUMMARY ๐
If you're just here like "how do I run an MPI application" โ this is the vibe you want:
shell$ mpirun [ -n X ] [ --hostfile <filename> ] <program>
This runs X copies of <program> in your current run-time environment. (And if you're running under a supported resource manager, Open MPI's mpirun will usually automatically use the corresponding resource manager process starter, instead of ssh for example โ because ssh requires a hostfile, or it'll just default to running all X copies on the localhost.) It schedules, by default, in a round-robin fashion by CPU slot. The rest of this documentation has the details, bestie. ๐
Also please note: mpirun automatically binds processes to hardware resources. With no further directives, three binding patterns get used (see map/rank/bind defaults for more details):
- Bind to core: when the number of processes is <= 2
- Bind to package: when the number of processes is > 2
- Bind to none: when oversubscribed
If your application uses threads, then you probably want to make sure you're either not bound at all (by specifying --bind-to none), or bound to multiple cores using an appropriate binding level or a specific number of processing elements per application process. ๐งตโจ
๐ OPEN MPI'S USE OF PRRTE ๐
Open MPI uses the PMIx Reference Runtime Environment (PRRTE) as the main engine for launching, monitoring, and terminating MPI processes. It's giving infrastructure. ๐
A lot of the documentation below is directly imported from PRRTE. So yeah, it talks about PRRTE concepts and command line options a lot. Except where noted, those concepts and command line arguments are all applicable to Open MPI too. ๐ฏ
But here's the tea: Open MPI extends the available PRRTE command line options, and it also slightly modifies PRRTE's default behaviors in a few cases. Those get specifically described in the documentation below. ๐ซถ
๐ฆ COMMAND LINE OPTIONS ๐ฆ
The core of Open MPI's mpirun processing is performed via the PRRTE <https://docs.prrte.org/>. Specifically: mpirun is effectively a wrapper around prterun, but mpirun's CLI options are slightly different than PRRTE's CLI commands. iykyk. ๐
โญ General command line options
The following general command line options are available.
-h|--helpโ This help message ๐ฌ-v|--verboseโ Enable extra verbose output ๐ฃ๏ธ-V|--versionโ Print version and exit ๐ท๏ธ
๐ Launch options
--default-hostfile <filename>โ Provide a default hostfile.-H|--host <list>โ Comma-delimited list of hosts on which to to invoke processes. See below for details.--hostfile <filename>โ Provide a hostfile. See below for details.--machinefile <filename>โ Synonym for--hostfile.--mca <key> <value>โ Pass context-specific MCA parameters; they are considered global if--gmcais not used and only one context is specified (<key>is the parameter name;<value>is the parameter value).--path <path>โ Path to be used to look for executables to start processes.--pmixmca <key> <value>โ Pass context-specific PMIx MCA parameters; they are considered global if only one context is specified (<key>>is the parameter name;<value>is the parameter value). See below for details.--preload-files <list>โ Preload the comma-separated list of files to the remote machines current working directory before starting the remote process.--prtemca <key> <value>โ Pass context-specific PRTE MCA parameters to the DVM. See below for details.--pset <name>โ User-specified name assigned to the processes in their given application.--rankfile <filename>โ Name of file to specify explicit task mapping.--runtime-options <list>โ List of options to pass to the launcher. See below for details.-s|--preload-binaryโ Preload the binary on the remote machine before starting the remote process.--set-cwd-to-session-dirโ Set the working directory of the started processes to their session directory.--show-progressโ Output a brief periodic report on launch progress.--wd <dir>โ Synonym for--wdir.--wdir <dir>โ Set the working directory of the started processes.-x <var>โ Export an environment variable, optionally specifying a value. See below for details.--set-env <var>=<val>โ Set an environment variable. See below for details.--unset-env <var>โ Unset an environment variable. See below for details.--prepend-env <var[c]> <val>โ Prepend a value to an environment variable See below for details.--append-env <var[c]> <val>โ Prepend a value to an environment variable See below for details.--gpu-support <val>โ Direct application to either enable (true) or disable (false) its internal library's GPU support ๐ฎ--app-pmix-prefix <val>โ Prefix to be used by an app to look for its PMIx installation on remote nodes.--no-app-prefixโ Do not provide a prefix directive to this application.
๐บ๏ธ Mapping, ranking, and binding options
--map-by <value>โ Controls how processes are distributed within a host. See below for details.--rank-by <value>โ Controls how processes are ordered inMPI_COMM_WORLD. See below for details.--bind-to <value>โ Controls the resources to which processes are bound within a host. See below for details.
๐ค Output options
--output <list>โ Comma-delimited list of options that control how output is generated. See below for details.--report-child-jobs-separatelyโ Return the exit status of the primary job only.--stream-buffering <value>โ Control how output is buffered. See below for details.--xterm <list>โ Create a new xterm window and display output from the specified ranks there. ๐ฅ๏ธ
๐ฅ Input options
--stdin <list>โ Specify procs to receive stdin; alloable values in<list>are: comma-delimited list of integer ranks,all,none. Defaults to0, indicating rank 0.
๐ง Specific options
--allow-run-as-rootโ Allow execution as root ((STRONGLY DISCOURAGED)). See below for details.--daemonizeโ Daemonize the DVM daemons into the background.--forward-signals <list>โ Comma-delimited list of additional signals (names or integers) to forward to application processes. See below for details.--launch-agent <agent>โ Name of daemon executable used to start processes on remote nodes (default:prted).--max-vm-size <size>โ Number of daemons to start.--noprefixโ Disable automatic--prefixbehavior. See below for details.--prefix <prefix>โ Prefix to be used to look for RTE executables.--pmix-prefix <prefix>โ Prefix to be used by a PRRTE executable to look for its PMIx installation on remote nodes.--set-sidโ Direct the DVM daemons to separate from the current session.--singleton <id>โ ID of the singleton process that started us.--tmpdir <dir>โ Set the root for the session directory tree.--tune <filename>โ File(s) containing MCA params for tuning DVM operations. See below for details.--uniform-nodesโ All allocated nodes should be treated as having the same topology
๐ MPI Options
--initial-errhandlerโ Specify the initial error handler that is attached to predefined communicators during the first MPI call.--memory-alloc-kindsโ Value is a comma separated list of memory allocation kinds.--display-commโ Display table of communication methods betweenMPI_COMM_WORLDranks duringMPI_Init--display-comm-finalizeโ Display table of communication methods between ranks duringMPI_Finalize--softโ This option does nothing, but is mandated by the MPI standard--arch <filename>โ This option does nothing, but is mandated by the MPI standard--file <filename>โ This option does nothing, but is mandated by the MPI standard
๐ Debugger / tool options
--keepalive <filename>โ Named pipe filename to monitor โ DVM will terminate upon closure--report-pid <value>โ Print out PID on stdout (-), stderr (+), or a filename (anything else)--report-uri <value>โ Print out URI on stdout (-), stderr (+), or a filename (anything else)--stop-on-exec <value>โ If supported, stop each specified process at start of execution--stop-in-init <value>โ Direct the specified processes to stop in the MPI initialization function--stop-in-app <value>โ Direct the specified processes to stop at an application-controlled location
๐ Debug options
--debug-daemonsโ Debug daemons โ if not set, the "verbose" setting will be limited to the DVM controller to reduce clutter. See below for details.--debug-daemons-fileโ Enable debugging of any PRTE daemons used by this application, storing their verbose output in files. See below for details.--display <value>โ Comma-delimited list of options for displaying information about the allocation and job. Allowed values for<value>:allocation,bind,map,map-devel,topo. See below for details.--get-stack-tracesโ If a timeout occurs, get stack traces of all application processes.--leave-session-attachedโ Do not discard stdout/stderr of remote PRTE daemons. See below for details.--report-state-on-timeoutโ Report all job and process states upon timeout.--spawn-timeout <seconds>โ Timeout the job if spawn takes more than the specified number of seconds.--test-suicide <seconds>โ Suicide instead of clean abort after delay.--timeout <seconds>โ Timeout the job after the specified number of seconds.--output-proctable <value>โ prints the complete proctable straight to stdout after launch. The allowed<value>s are+,-, or a filename. That's the whole menu, no secret third thing. โจ
๐ Fault Tolerance Options
Okay so bestie, real talk first: these ones only show up if Open MPI / PRRTE were compiled with Fault Tolerance functionality enabled. No FT build, no FT options, periodt. ๐ญ
--enable-recoveryโ enable recovery from process failure (Default = disabled)--max-restartsโ max number of times to restart a failed process--disable-recoveryโ disable recovery (heads up: this resets all the recovery options to off)--continuousโ job is to run until explicitly terminated--with-ftโ specify the type(s) of error handling that the application will use.
๐ Details of individual command line options
The sections below offer more detail than the abbreviated lists, above. Grab a snack and a blanket, we're going deep. ๐
The --allow-run-as-root option
Allow execution as root (STRONGLY DISCOURAGED). Like, the manpage itself is yelling at you in caps. Respect the caps. ๐ญ
Running as root exposes the user to potentially catastrophic file system corruption and damage โ e.g., if the user accidentally points the root of the session directory to a system required point, this directory and all underlying elements will be deleted upon job completion, thereby rendering the system inoperable. Yeah. Deleted. Gone. The whole system, uninstalled by vibes. ๐
That said, it is recognized that some environments (e.g., containers) may require operation as root, and that the user accepts the risks in those scenarios. So if it's truly your moment, you can override PRRTE's run-as-root protection by providing one of the following:
- The
--allow-run-as-rootcommand line directive - Adding BOTH of the following environmental parameters:
OMPI_ALLOW_RUN_AS_ROOT=1OMPI_ALLOW_RUN_AS_ROOT_CONFIRM=1
Again, we recommend this only be done if absolutely necessary. Not a cute shortcut. Not a flex. Only if you have to. ๐ซถ
The --bind-to option
By default, processes are bound to individual CPUs (either COREs or HWTHREADs, as defined by default or by user specification for the job). On nodes that are OVERSUBSCRIBEd (i.e., where the number of procs exceeds the number of assigned slots), the default is to not bind the processes.
Note: Processes from prior jobs that are already executing on a node are not "unbound" when a new job mapping results in the node becoming oversubscribed. They just keep doing their thing. ๐
Binding is performed to the first available specified object type within the object where the process was mapped. In other words, binding can only be done to the mapped object or to a resource located beneath that object.
An object is considered completely consumed when the number of processes bound to it equals the number of CPUs within it. Unbound processes are not considered in this computation. Additional processes cannot be mapped to consumed objects unless the OVERLOAD qualifier is provided via the --bind-to command line option.
Note that directives and qualifiers are case-insensitive and can be shortened to the minimum number of characters to uniquely identify them. Thus, L1CACHE can be given as l1cache or simply as L1. Minimalist icon behavior. ๐
Supported binding directives include:
NONEdoes not bind the processesHWTHREADbinds each process to a single hardware thread/ This requires that hwthreads be treated as independent CPUs (i.e., that either the HWTCPUS qualifier be provided to the map-by option or that hwthreads be designated as CPUs by default).COREbinds each process to a single core. This can be done whether hwthreads or cores are being treated as independent CPUs provided that mapping is performed at the core or higher level.L1CACHEbinds each process to all the CPUs in an L1 cache.L2CACHEbinds each process to all the CPUs in an L2 cacheL3CACHEbinds each process to all the CPUs in an L3 cacheNUMAbinds each process to all the CPUs in a NUMA regionPACKAGEbinds each process to all the CPUs in a PACKAGE
Any directive can include qualifiers by adding a colon (:) and any combination of one or more of the following to the --bind-to option:
OVERLOADindicates that objects can have more processes bound to them than CPUs within themIF-SUPPORTEDindicates that the job should continue to be launched and executed even if binding cannot be performed as requested.LIMIT=nlimits the number of processes bound to each eligible representative of the specified type to the given number. For example, specifying"โbind-to l3:limit=2"would direct PRRTE to bind ranks to the L3caches, limiting the number of processes bound to each l3cache to two โ i.e., bind 2 processes to a given l3cache, and then move on to the next.
Note: Directives and qualifiers are case-insensitive.OVERLOADis the same asoverload.
The --debug-daemons option
Debug daemon output enabled. This is a somewhat limited stream of information normally used to simply confirm that the daemons started. Includes leaving the output streams open. Very "is it alive" energy. ๐ฆ
The --debug-daemons-file option
Debug daemon output is enabled and all output from the daemons is redirected into files with names of the form:
output-prted-<daemon-nspace>-<nodename>.log
These names avoid conflict on shared file systems. The files are located in the top-level session directory assigned to the DVM.
The --display option
The display command line directive must be accompanied by a comma-delimited list of case-insensitive options indicating what information about the job and/or allocation is to be displayed. The full directive need not be provided โ only enough characters are required to uniquely identify the directive. For example, ALL is sufficient to represent the ALLOCATION directive โ while MAP can not be used to represent MAP-DEVEL (though MAP-D would suffice). Abbreviations: only as much as you need, never more. ๐
Supported values include:
ALLOCATIONdisplays the detected hosts and slot assignments for this jobBINDINGSdisplays the resulting bindings applied to processes in this jobMAPdisplays the resulting locations assigned to processes in this jobMAP-DEVELdisplays a more detailed report on the locations assigned to processes in this job that includes local and node ranks, assigned bindings, and other dataTOPO=LISTdisplays the topology of each node in the semicolon-delimited list that is allocated to the jobCPUS[=LIST]displays the available CPUs on the provided semicolon-delimited list of nodes (defaults to all nodes)
The display command line directive can include qualifiers by adding a colon (:) and any combination of one or more of the following (delimited by colons):
PARSEABLEdirects that the output be provided in a format that is easily parsed by machines. Note thatPARSABLEis also accepted as a typical spelling for the qualifier.PHYSICALdirects that the output of the BINDINGS option be displayed using physical (instead of logical) CPU IDs.
Provided qualifiers will apply to all of the display directives unless noted.
The --forward-signals option
Comma-delimited list of additional signals (names or integers) to forward to application processes (none = forward nothing). Signals provided by default include SIGTSTP, SIGUSR1, SIGUSR2, SIGABRT, SIGALRM, and SIGCONT.
The --host option
Host syntax consists of a comma-delimited list of node names, each entry optionally containing a :N extension indicating the number of slots to assign to that entry:
--host node01:5,node02
In the absence of the slot extension, one slot will be assigned to the node. Duplicate entries are aggregated and the number of slots assigned to that node are summed together.
Note: A "slot" is the PRRTE term for an allocatable unit where we can launch a process. Thus, the number of slots equates to the maximum number of processes PRRTE may start on that node without oversubscribing it. Slots = how many friends can come to this node's party. ๐
The --hostfile option
PRRTE supports several levels of user-specified host lists based on an established precedence order. Users can specify a default hostfile that contains a list of nodes to be used by the DVM. Only one default hostfile can be provided for a given DVM. In addition, users can specify a hostfile that contains a list of nodes to be used for a DVM, or can provide a comma-delimited list of nodes to be used for that DVM via the --host command line option.
The precedence order applied to these various options depends to some extent on the local environment. Here's how host and hostfile directives work together to define the set of hosts upon which a DVM will execute in the absence of a resource manager (RM):
- Default hostfile
unset,hostunset,hostfileunsetโ The DVN will consist solely of the local host where the DVM was started. - Default hostfile
unset,hostset,hostfileunsetโ Host option defines resource list for the DVM. - Default hostfile
unset,hostunset,hostfilesetโ Hostfile option defines resource list for the DVM. - Default hostfile
unset,hostset,hostfilesetโ Hostfile option defines resource list for the DVM, then host filters the list to define the final set of nodes to be used by the DVM - Default hostfile =
set, hostfile =unset, host =unsetโ the default hostfile defines the resource list for the DVM ๐ - Default hostfile =
set, hostfile =set, host =unsetโ the default hostfile defines the resource list for the DVM, and then host filters that list to define the final set of nodes the DVM actually uses โจ - Default hostfile =
set, hostfile =set, host =setโ the default hostfile defines the resource list for the DVM, then hostfile filters the list, and then host filters the list again to define the final set of nodes the DVM actually uses ๐ซถ
This changes somewhat when there's an RM in the picture, because that entity specifies the initial allocation of nodes. In that case, the default hostfile, hostfile and host directives are all used to filter the RM's specification, so a user can utilize different portions of the allocation for different DVMs ๐. It's done according to the same precedence order as in the prior table, with the RM providing the initial pool of nodes.
Hostfiles (sometimes called "machine files", which is giving vintage) are a combination of two things:
- A listing of hosts on which to launch processes.
- Optionally, limit the number of processes which can be launched on each host.
Hostfile syntax is one node name on each line, optionally including a designated number of "slots":
# This is a comment line, and will be ignored
node01 slots=10
node13 slots=5
node15
node16
node17 slots=3
...
Blank lines and lines beginning with a # are ignored ๐.
A "slot" is the PRRTE term for an allocatable unit where we can launch a process. See the section on definition of the term slot for a longer description of slots (iykyk).
In the absence of the slot parameter, PRRTE will assign either the number of slots to be the number of CPUs detected on the node or the resource manager-assigned value if operating in the presence of an RM.
Important: If you're using a resource manager, the user-specified number of slots is capped by the RM-assigned value. No arguing with the RM, bestie. ๐ โโ๏ธ
The --leave-session-attached option
Do not discard stdout/stderr of remote PRRTE daemons. The primary use for this option is to ensure that the daemon output streams (i.e., stdout and stderr) remain open after launch, thus allowing the user to see any daemon-generated error messages ๐. Otherwise, the daemon will "daemonize" itself upon launch, thereby closing its output streams. It said "I'm going ghost", basically. ๐
The --map-by option
Processes are mapped based on one of the following directives as applied at the job level:
SLOTassigns procs to each node up to the number of available slots on that node before moving to the next node in the allocationHWTHREADassigns a proc to each hardware thread on a node in a round-robin manner up to the number of available slots on that node before moving to the next node in the allocationCORE(default) assigns a proc to each core on a node in a round-robin manner up to the number of available slots on that node before moving to the next node in the allocationL1CACHEassigns a proc to each L1 cache on a node in a round-robin manner up to the number of available slots on that node before moving to the next node in the allocationL2CACHEassigns a proc to each L2 cache on a node in a round-robin manner up to the number of available slots on that node before moving to the next node in the allocationL3CACHEassigns a proc to each L3 cache on a node in a round-robin manner up to the number of available slots on that node before moving to the next node in the allocationNUMAassigns a proc to each NUMA region on a node in a round-robin manner up to the number of available slots on that node before moving to the next node in the allocationPACKAGEassigns a proc to each package on a node in a round-robin manner up to the number of available slots on that node before moving to the next node in the allocationNODEassigns processes in a round-robin fashion to all nodes in the allocation, with the number assigned to each node capped by the number of available slots on that nodeSEQ(often accompanied by thefile=<path>qualifier) assigns one process to each node specified in the file. The sequential file is to contain an entry for each desired process, one per line of the file.PPR:N:resourcemapsNprocs to each instance of the specified resource type in the allocationRANKFILE(often accompanied by thefile=<path>qualifier) assigns one process to the node/resource specified in each entry of the file, one per line of the file.PE-LIST=a,bassigns procs to each node in the allocation based on theORDEREDqualifier. The list is comprised of comma-delimited ranges of CPUs to use for this job. If theORDEREDqualifier is not provided, then each node will be assigned procs up to the number of available slots, capped by the availability of the specified CPUs. IfORDEREDis given, then one proc will be assigned to each of the specified CPUs, if available, capped by the number of slots on each node and the total number of specified processes. Providing theOVERLOADqualifier to the "bind-to" option removes the check on availability of the CPU in both cases. ๐ฅ
Any directive can include qualifiers by adding a colon (:) and any combination of one or more of the following (delimited by colons) to the --map-by option (except where noted):
PE=nbindnCPUs to each process (can not be used in combination withrankfileorpe-listdirectives)SPANload balance the processes across the allocation by treating the allocation as a single "super-node" (can not be used in combination withslot,node,seq,ppr,rankfile, orpe-listdirectives)OVERSUBSCRIBEallow more processes on a node than processing elementsNOOVERSUBSCRIBEmeans!OVERSUBSCRIBENOLOCALdo not launch processes on the same node asprunHWTCPUSuse hardware threads as CPU slotsCORECPUSuse cores as CPU slots (default)INHERITindicates that a child job (i.e., one spawned from within an application) shall inherit the placement policies of the parent job that spawned it.NOINHERITmeans!INHERITFILE=<path>(path to file containing sequential or rankfile entries).ORDEREDonly applies to thePE-LISToption to indicate that procs are to be bound to each of the specified CPUs in the order in which they are assigned (i.e., the first proc on a node shall be bound to the first CPU in the list, the second proc shall be bound to the second CPU, etc.) ๐ง
Note: Directives and qualifiers are case-insensitive and can be shortened to the minimum number of characters to uniquely identify them. Thus,L1CACHEcan be given asl1cacheor simply asL1. Slay, typing is optional. โจ
The type of CPU (core vs hwthread) used in the mapping algorithm is determined as follows:
- by user directive on the command line via the
HWTCPUSqualifier to the--map-bydirective - by setting the
rmaps_default_mapping_policyMCA parameter to include theHWTCPUSqualifier. This parameter sets the default value for a PRRTE DVM โ qualifiers are carried across to DVM jobs started viaprununless overridden by the user's command line - defaults to
COREin topologies where core CPUs are defined, and to hwthreads otherwise.
If your application uses threads, then you probably want to ensure that you are either not bound at all (by specifying --bind-to none), or bound to multiple cores using an appropriate binding level or specific number of processing elements per application process via the PE=# qualifier to the --map-by command line directive. Threads deserve their own room, fr fr. ๐
A more detailed description of the mapping, ranking, and binding procedure can be obtained via the --help placement option.
The --output option
The output command line directive must be accompanied by a comma-delimited list of case-insensitive options that control how output is generated ๐. The full directive need not be provided โ only enough characters are required to uniquely identify the directive. For example, MERGE is sufficient to represent the MERGE-STDERR-TO-STDOUT directive โ while TAG can not be used to represent TAG-DETAILED (though TAG-D would suffice, so close bestie ๐ญ).
Supported values include:
TAGmarks each output line with the[job,rank]<stream>:of the process that generated itTAG-DETAILEDmarks each output line with a detailed annotation containing[namespace,rank][hostname:pid]<stream>:of the process that generated itTAG-FULLNAMEmarks each output line with the[namespace,rank]<stream>:of the process that generated itTAG-FULLNAMEmarks each output line with the[namespace,rank]<stream>:of the process that generated it (yes, it's listed twice in the page โ we don't question the lore ๐ซถ)TIMESTAMPprefixes each output line with a[datetime]<stream>:stamp. Note that the timestamp will be the time when the line is output by the DVM and not the time when the source output itXMLprovides all output in a pseudo-XML formatMERGE-STDERR-TO-STDOUTmerges stderr into stdoutDIR=DIRNAMEredirects output from application processes intoDIRNAME/job/rank/std[out,err,diag]. The provided name will be converted to an absolute pathFILE=FILENAMEredirects output from application processes intofilename.rank. The provided name will be converted to an absolute path ๐ธ
Supported qualifiers include NOCOPY โ as in, do not copy the output over to the stdout/stderr streams ๐
โ and RAW โ which means do not buffer the output into complete lines, just yeet it out as it is received. โจ
The --pmixmca option ๐
Pass a PMIx MCA parameter, bestie.
Syntax: --pmixmca <key> <value>, where key is the parameter name and value is the parameter value.
The --prefix option ๐
The prefix that gets used to go look for PRRTE executables. PRRTE automatically sets the prefix for remote daemons if it was either configured with the --enable-prte-prefix-by-default option OR prte itself was executed with an absolute path to the prte command. This option overrides those settings, if present, and forces use of the path you provided. Periodt. ๐
The --pmix-prefix option ๐ธ
The prefix a PRRTE executable uses to go find its PMIx installation on remote nodes. This is the location of the top-level directory for the installation. If the installation has not been moved, it would be the value given to โโprefixโ when the installation was configured.
Okay so heads up ๐ โ PRRTE literally cannot determine the exact name of the library subdirectory under this location. Some systems will call it โlibโ while others call it โlib64โ. Accordingly, PRRTE will use the library subdirectory name of the PMIx installation used to build PRRTE.
The --app-prefix option ๐ฆ
The prefix an app uses to go look for its PMIx installation on remote nodes. This is the location of the top-level directory for the installation. If the installation has not been moved, it would be the value given to โโprefixโ when the installation was configured.
Same vibe check as before, bestie ๐ โ PRRTE cannot determine the exact name of the library subdirectory under this location. For example, some systems will call it โlibโ while others call it โlib64โ. Accordingly, PRRTE will use the library subdirectory name of the PMIx installation used to build PRRTE.
In the absence of providing an application-specific prefix, the PMIx prefix (if given) used by PRRTEโs own executables will be applied unless the โโno-app-prefixโ directive is given.
The --no-app-prefix option ๐
Do not apply any prefix to this application. This is needed when a default PMIx prefix has been given to PRRTE, but the application has been built against a PMIx library that (a) is different from the one used by PRRTE, and (b) was not moved. Otherwise, PRRTE will apply its default prefix to the application. So real โ no notes. ๐
The --prtemca option โญ
Pass a PRRTE MCA parameter.
Syntax: --prtemca <key> <value>, where key is the parameter name and value is the parameter value.
The --noprefix option ๐
Disable automatic --prefix behavior. PRRTE automatically sets the prefix for remote daemons if it was either configured with the --enable-prte-prefix-by-default option OR prte itself was executed with an absolute path to the prte command. This option disables that behavior. That's it, that's the whole thing. โจ
The --rank-by option ๐
PRRTE automatically ranks processes for each job starting from zero. Regardless of the algorithm used, rank assignments span applications in the same job โ i.e., a command line of
-n 3 app1 : -n 2 app2
will result in app1 having three processes ranked 0-2 and app2 having two processes ranked 3-4.
By default, process ranks are assigned in accordance with the mapping directive โ e.g., jobs that are mapped by-node will have the process ranks assigned round-robin on a per-node basis. However, users can override the default by specifying any of the following directives using the --rank-by command line option:
- SLOT assigns ranks to each process on a node in the order in which the mapper assigned them. This is the default behavior, but is provided as an explicit option to allow users to override any alternative default specified in the environment. When mapping to a specific resource type, procs assigned to a given instance of that resource on a node will be ranked on a per-resource basis on that node before moving to the next node.
- NODE assigns ranks round-robin on a per-node basis.
- FILL assigns ranks to procs mapped to a particular resource type on each node, filling all ranks on that resource before moving to the next resource on that node. For example, procs mapped by
L1cachewould have all procs on the firstL1cacheranked sequentially before moving to the secondL1cacheon the node. Once all procs on the node have been ranked, ranking would continue on the next node. - SPAN assigns ranks round-robin to procs mapped to a particular resource type, treating the collection of resource instances spanning the entire allocation as a single โsuper nodeโ before looping around for the next pass. Thus, ranking would begin with the first proc on the first
L1cacheon the first node, then the next rank would be assigned to the first proc on the secondL1cacheon that node, proceeding across until the first proc had been ranked on allL1cacheused by the job before circling around to rank the second proc on each object.
The rank-by command line option has no qualifiers. Iconic behavior, no extra knobs. ๐
Note: Directives are case-insensitive.SPANis the same asspan. iykyk ๐ซถ
A more detailed description of the mapping, ranking, and binding procedure can be obtained via the --help placement option.
The --runtime-options option ๐ฅ
The --runtime-options command line directive must be accompanied by a comma-delimited list of case-insensitive options that control the runtime behavior of the job. The full directive need not be provided โ only enough characters are required to uniquely identify the directive.
Runtime options are typically true or false, though this is not a requirement on developers. Since the value of each option may need to be set (e.g., to override a default set by MCA parameter), the syntax of the command line directive includes the use of an = character to allow inclusion of a value for the option. For example, one can set the ABORT-NONZERO-STATUS option to true by specifying it as ABORT-NONZERO-STATUS=1. Note that boolean options can be set to true using a non-zero integer or a case-insensitive string of the word true. For the latter representation, the user need only provide at least the T character. The same policy applies to setting a boolean option to false.
Note that a boolean option will default to true if provided without a value. Thus, --runtime-options abort-nonzero is sufficient to set the ABORT-NONZERO-STATUS option to true.
Supported values include:
ERROR-NONZERO-STATUS[=(bool)]: if set to false, this directs the runtime to treat a process that exits with non-zero status as a normal termination. If set to true, the runtime will consider such an occurrence as an error termination and take appropriate action โ i.e., the job will be terminated unless a runtime option directs otherwise. This option defaults to a true value if the option is given without a value.DONOTLAUNCH: directs the runtime to map but not launch the specified job. This is provided to help explore possible process placement patterns before actually starting execution. No value need be passed as this is not an option that can be set by default in PRRTE.SHOW-PROGRESS[=(bool)]: requests that the runtime provide progress reports on its startup procedure โ i.e., the launch of its daemons in support of a job. This is typically used to debug DVM startup on large systems. This option defaults to a true value if the option is given without a value.NOTIFYERRORS[=(bool)]: if set to true, requests that the runtime provide a PMIx event whenever a job encounters an error โ e.g., a process fails. The event is to be delivered to each remaining process in the job. This option defaults to a true value if the option is given without a value. See--help notificationsfor more detail as to the PMIx event codes available for capturing failure events.RECOVERABLE[=(bool)]: if set to true, this indicates that the application wishes to consider the job as recoverable โ i.e., the application is assuming responsibility for recovering from any process failure. This could include application-driven spawn of a substitute process or internal compensation for the missing process. This option defaults to a true value if the option is given without a value.AUTORESTART[=(bool)]: if set to true, this requests that the runtime automatically restart failed processes up to โmax restartsโ number of times. This option defaults to a true value if the option is given without a value.CONTINUOUS[=(bool)]: if set to true, this informs the runtime that the processes in this job are to run until explicitly terminated. Processes that fail are to be automatically restarted up to โmax restartsโ number of times. Notification of process failure is to be delivered to all processes in the application. This is the equivalent of specifyingRECOVERABLE,NOTIFYERRORS, andAUTORESTARToptions except that the runtime, not the application, assumes responsibility for process recovery. This option defaults to a true value if the option is given without a value.MAX-RESTARTS=<int>: indicates the maximum number of times a given process is to be restarted. This can be set at the application or job level (which will then apply to all applications in that job).EXEC-AGENT=<path>indicates the executable that shall be used to start an application process. The resulting command for starting an application process will be<path> app <app-argv>. The path may contain its own command line arguments.DEFAULT-EXEC-AGENT: directs the runtime to use the system default exec agent to start an application process. No value need be passed as this is not an option that can be set by default in PRRTE.OUTPUT-PROCTABLE[(=channel)]: directs the runtime to report the convential debugger process table (includesPIDand host location of each process in the application). Output is directed tostdoutif the channel is-,stderrif+, or into the specified file otherwise. If no channel is specified, output will be directed tostdout.STOP-ON-EXEC: directs the runtime to stop the application process(es) immediately upon execโing them. The directive will apply to all processes in the job.STOP-IN-INIT: indicates that the runtime should direct the application process(es) to stop inPMIx_Init(). The directive will apply to all processes in the job.STOP-IN-APP: indicates that the runtime should direct application processes to stop at some application-defined place and notify they are ready-to-debug. The directive will apply to all processes in the job.TIMEOUT=<string>โ tells the runtime to โ terminate the job once it's been running for the time you specified. The time goes in colon-delimited format, like01:20:13:05, which means 1 day, 20 hours, 13 minutes and 5 seconds ๐. If you don't use colons at all, the value is assumed to be in seconds, fr fr.SPAWN-TIMEOUT=<string>โ tells the runtime to terminate the job if the launch hasn't finished within the time you gave. Same colon-delimited format โ01:20:13:05= 1 day, 20 hours, 13 minutes and 5 seconds โณ. And again, no colons means seconds, periodt.REPORT-STATE-ON-TIMEOUT[(=bool)]โ tells the runtime to hand you a detailed report on the job's and the application processes' state when a job timeout happens ๐. Defaults to a true value if you give the option with no value.GET-STACK-TRACES[(=bool)]โ asks the runtime for stack traces on all the application processes that are still running when the timeout hits ๐ง. Defaults to a true value if you give the option with no value.REPORT-CHILD-JOBS-SEPARATELY[(=bool)]โ tells the runtime to report the exit status of any child jobs spawned by the primary job separately ๐ถ. If it's false, then the final exit status reported will be zero if the primary job and all spawned jobs exited normally, or the first non-zero status returned by either the primary or the child jobs. Defaults to a true value if you give the option with no value.AGGREGATE-HELP-MESSAGES[(=bool)]โ tells the runtime to aggregate help messages, reporting each unique help message just once, alongside the number of processes that reported it ๐๏ธ. Defaults to a true value if you give the option with no value.FWD-ENVIRONMENT[(=bool)]โ tells the runtime to forward the entire local environment in support of the application ๐. Defaults to a true value if you give the option with no value.
The --runtime-options command line option has no qualifiers, bestie, that's just how it is ๐
.
Note: Directives are case-insensitive.FWD-ENVIRONMENTis the same asfwd-environment. Slay, no caps-lock drama required.
๐ The --stream-buffering option
Adjust buffering for stdout/stderr. Allowable values:
0: unbuffered1: line buffered2: fully buffered
๐๏ธ The --tune option
A comma-delimited list of one or more files containing PRRTE and PMIx MCA params for tuning DVM and/or application operations โจ. Parameters in the file get treated as generic parameters and are subject to the translation rules/uncertainties. See --help mca for more info.
The syntax in the file is:
param = value
One parameter and its associated value per line. Empty lines and lines that begin with the # character are ignored, and so is any whitespace around the = character ๐.
๐งฌ The --uniform-nodes option
The uniform-nodes command line directive tells everyone that the allocated nodes should be treated as having only one topology, so the launch can be optimized for that scenario ๐. That includes making sure all CPU allocations are the same on each node, that each node has the same number of devices and topological layers, etc.
Note: The runtime does not currently support mixes of chips with different endianness ๐ญ.
๐ค The -x option
Export an environment variable, optionally with a value. For example:
-x fooexports the environment variablefooand takes its value from the current environment.-x foo=barexports the environment variable namefooand sets its value tobarin the started processes.-x foo*exports all current environmental variables starting withfoo.
๐ซ The --set-env option
Set the named environmental variable to the specified value. This will overwrite the existing value, if it exists. Equivalent to the โ-x foo=valโ option. Simple as that ๐.
๐ซ The --unset-env option
Unset the named environmental variable. Note that --unset-env foo* unsets all current environmental variables starting with โfooโ.
โฌ
๏ธ The --prepend-env option
Prepend the named environment variable with the given value. The โ[c]โ must be appended to the name to specify the separator to be used when appending the value.
Example: --prepend-envar LD_LIBRARY_PATH[:] foo/lib will result in:
LD_LIBRARY_PATH=foo/lib:$LD_LIBRARY_PATH
โก๏ธ The --append-env option
Append the named environment variable with the given value. The โ[c]โ must be appended to the name to specify the separator to be used when appending the value.
Example: --append-envar LD_LIBRARY_PATH[:] foo/lib will result in:
LD_LIBRARY_PATH=$LD_LIBRARY_PATH:foo/lib
๐ Deprecated command line options
The following command line options are deprecated, and should generally not be used. They may be removed in a future release of Open MPI ๐. (Read: don't get attached, they're on their way out.)
The --bind-to-core option
Bind each process to its own core.
Deprecated โ This option is deprecated. Please use --bind-to core.
The --display-allocation option
Display the allocation being used by this job.
Deprecated โ This option is deprecated. Please use --display alloc.
The --display-devel-allocation option
Display a detailed list (mostly intended for developers) of the allocation being used by this job.
Deprecated โ This option is deprecated. Please use --display alloc-devel.
The --display-devel-map option
Display a detailed process map (mostly intended for developers) just before launch.
Deprecated โ This option is deprecated. Please use --display map-devel.
The --display-map option
Display the process map just before launch.
Deprecated โ This option is deprecated. Please use --display map.
The --display-topo option
Display the topology as part of the process map (mostly intended for developers) just before launch.
Deprecated โ This option is deprecated. Please use --display topo.
The --gmca option
Syntax: --gmca <key> <value>, where key is the parameter name and value is the parameter value. The g prefix means this parameter is โglobalโ, and is to be applied to all application contexts โ not just the one where the directive shows up ๐.
Pass generic MCA parameters โ i.e., parameters whose project affiliation has to be figured out by PRRTE based on matching the name of the parameter with defined values from various projects that PRRTE knows about.
Deprecated โ This translation can be incomplete (e.g., if a known project adds or changes parameters) โ thus, it is strongly recommended that users use project-specific parameters such as--gprtemcaor--gpmixmca.
The --mca option
Syntax: --mca <key> <value>, where key is the parameter name and value is the parameter value.
Pass generic MCA parameters โ i.e., parameters whose project affiliation has to be determined by PRRTE based on matching the name of the parameter with defined values from various projects that PRRTE knows about.
Deprecated โ This translation can be incomplete (e.g., if a project adds or changes parameters) โ thus, it is strongly recommended that users use project-specific parameters such as--prtemcaor--pmixmca.
The --merge-stderr-to-stdout option
Merge stderr to stdout for each process.
Deprecated โ This option is deprecated. Please use --output merge.
The --output-directory option
Redirect output from application processes into filename/job/rank/std[out,err,diag] ๐. A relative path value will be converted to an absolute path. The directory name may include a colon followed by a comma-delimited list of optional case-insensitive directives. Supported directives currently include NOJOBID (do not include a job-id directory level) and NOCOPY (do not copy the output to the stdout/err streams).
Deprecated โ This option is deprecated. Please use --output dir=<path>.
The --output-filename option
Redirect output from application processes into filename.rank. A relative path value will be converted to an absolute path. The directory name may include a colon followed by a comma-delimited list of optional case-insensitive directives. Supported directives currently include NOCOPY (do not copy the output to the stdout/err streams).
Deprecated โ This option is deprecated. Please use --output file=<path>.
The --report-bindings option
Display process bindings to stderr.
Deprecated โ This option is deprecated. Please use --display bindings.
The --tag-output option
Tag all output with [job,rank].
Deprecated โ This option is deprecated. Please use --output.
The --timestamp-output option
Timestamp all application process output.
Deprecated โ This option is deprecated. Please use --output timestamp.
The --xml option
Provide all output in XML format.
Deprecated โ This option is deprecated. Please use --output.
๐จ OPTIONS (OLD / HARD-CODED CONTENT โ TO BE AUDITED
๐ข This is old content
This is the old section of manually hard-coded content. It should probably be read / audited and see what we want to keep and what we want to discard. Feel free to refer to https://docs.prrte.org/ rather than replicating content here (e.g., for the definition of a slot and other things). Not me reading the internal monologue of the docs team ๐.
mpirun will send the name of the directory where it was invoked on the local node to each of the remote nodes, and attempt to change to that directory. See the โCurrent Working Directoryโ section below for further details ๐ .
<program>: The program executable. This is identified as the first non-recognized argument tompirun.<args>: Pass these run-time arguments to every new process. These must always be the last arguments tompirun. If an app context file is used,<args>will be ignored.-h,--help: Display help for this command.-q,--quiet: Suppress informative messages fromorterunduring application execution ๐คซ.-v,--verbose: Be verbose.-V,--version: Print version number. If no other arguments are given, this will also causeorterunto exit.-N <num>: Launch num processes per node on all allocated nodes (synonym for--npernode).--display-map: Display a table showing the mapped location of each process prior to launch.--display-allocation: Display the detected resource allocation.--output-proctable: Output the debugger proctable after launch.--dvm: Create a persistent distributed virtual machine (DVM) ๐ฅ๏ธ.--max-vm-size <size>: Number of daemons to start.
okay bestie, this is the part where we decide where all the chaos physically goes down. use one of the following options to specify which hosts (nodes) of the cluster to run on. ๐
tiny history moment that actually matters: as of the start of the v1.8 release, mpirun will launch a daemon onto each host in the allocation (as modified by the following options) at the very beginning of execution โ regardless of whether or not application processes will eventually be mapped to execute there. why tho?? to allow collection of hardware topology information from the remote nodes, thus allowing us to map processes against known topology. โจ that's the glow-up. However, it is a change from the behavior in prior releases, where daemons were only launched after mapping was complete, and thus only occurred on nodes where application processes would actually be executing. so if you're coming from an old version, this is your reminder that the daemons show up early now. ๐
-H,--host <host1,host2,...,hostN>โ the list of hosts on which to invoke processes.--hostfile <hostfile>โ provide a hostfile to use.--default-hostfile <hostfile>โ provide a default hostfile.--machinefile <machinefile>โ exactly the same thing as--hostfile, just wearing a different outfit. (It's a synonym for--hostfile.)--cpu-set <list>โ restrict launched processes to the specified logical CPUs on each node (comma-separated list). and no, this doesn't cancel your binding options โ those still apply within the specified envelope. like, you can totally elect to bind each process to only one CPU within the specified CPU set. ๐
๐ซถ how many processes tho
The following options specify the number of processes to launch. major disclaimer: none of the options imply a particular binding policy โ e.g., requesting N processes for each package does not imply that the processes will be bound to the package. saying "do this many per package" is not the same as saying "glue them to the package", okay?? they are two separate slayings. ๐
-n,--n,-c,-np <#>โ run this many copies of the program on the given nodes. this option indicates that the specified file is an executable program and not an application context. if no value is provided for the number of copies to execute (i.e., neither the-nnor its synonyms are provided on the command line), Open MPI will automatically execute a copy of the program on each process slot โ see PRRTE's definition of "slot" athttps://docs.prrte.org/en/latest/placement/overview.html#definition-of-slotif you want the lore. but heads up: this feature can only be used in the SPMD model, and will return an error (without beginning execution of the application) otherwise. ๐
Note: the-noption is the preferred option to be used to specify the number of copies of the program to be executed, but the alternate options are also accepted. bestie behavior = use-n. ๐
--map-by ppr:N:<object>โ launch N times the number of objects of the specified type on each node.--npersocket <#persocket>โ on each node, launch this many processes times the number of processor sockets on the node. the-npersocketoption also turns on the--bind-to-socketoption. (deprecated in favor of--map-by ppr:n:package) ๐ซ--npernode <#pernode>โ on each node, launch this many processes. (deprecated in favor of--map-by ppr:n:node)--pernodeโ on each node, launch one process โ equivalent to--npernode 1. (deprecated in favor of--map-by ppr:1:node)
๐บ๏ธ to map processes
--map-by <object>โ map to the specified object, defaults topackage. the supported options includeslot,hwthread,core,L1cache,L2cache,L3cache,package,numa,node,seq,rankfile,pe-list=#, andppr. any object can include modifiers by adding a:and any combination of the following:pe=nโ bindnprocessing elements to each procspanโ load balance the processes across the allocationoversubscribeโ allow more processes on a node than processing elementsnooversubscribeโ do not allow more processes on a node than processing elements (default)nolocalโ do not place processes on the same host as thempirunprocesshwtcpusโ use hardware threads as CPU slots for mappingcorecpusโ use processor cores as CPU slots for mapping (default)file=filenameโ used with rankfile; usefilenameto specify the file to useorderedโ used withpe-listto bind each process to one of the specified processing elements
Note:socketis also accepted as an alias forpackage. โจ
--bycoreโ map processes by core. (deprecated in favor of--map-by core)--byslotโ map and rank processes round-robin by slot. (deprecated in favor of--map-by slot)--nolocalโ do not run any copies of the launched application on the same node asorterunis running. this option will override listing the localhost with--hostor any other host-specifying mechanism. it's an alias for--map-by :nolocal. ๐ซ๐--nooversubscribeโ do not oversubscribe any nodes; error (without starting any processes) if the requested number of processes would cause oversubscription. this option implicitly sets "max_slots" equal to the "slots" value for each node. (Enabled by default). alias for--map-by :nooversubscribe.--oversubscribeโ nodes are allowed to be oversubscribed, even on a managed system, and overloading of processing elements is fine. alias for--map-by :oversubscribe. ๐ฅ--bynodeโ launch processes one per node, cycling by node in a round-robin fashion. this spreads processes evenly among nodes and assignsMPI_COMM_WORLDranks in a round-robin, "by node" manner. (deprecated in favor of--map-by node)--cpu-list <cpus>โ comma-delimited list of processor IDs to which to bind processes [`default=NULL]. processor IDs are interpreted as hwloc logical core IDs.
Note: you can run thehwloclstopo(1)command to see a list of available cores and their logical IDs. go peek, bestie, the info is right there. ๐
๐ to order processes' ranks in MPI_COMM_WORLD
--rank-by <mode>โ rank in round-robin fashion according to the specified mode, defaults toslot. the supported options includeslot,node,fill, andspan.
๐ for process binding
--bind-to <object>โ bind processes to the specified object, defaults tocore. supported options includeslot,hwthread,core,l1cache,l2cache,l3cache,package,numa, andnone.--cpus-per-proc <#perproc>โ bind each process to the specified number of cpus. (deprecated in favor of--map-by <obj>:PE=n)--cpus-per-rank <#perrank>โ alias for--cpus-per-proc. (deprecated in favor of--map-by <obj>:PE=n)--bind-to-coreโ bind processes to cores. (deprecated in favor of--bind-to core)--bind-to-socketโ bind processes to processor sockets. (deprecated in favor of--bind-to package)--report-bindingsโ report any bindings for launched processes. honestly iconic for debugging. ๐
๐ง for rankfiles
--rankfile <rankfile>โ provide a rankfile file. (deprecated in favor of--map-by rankfile:file=FILE)
๐ธ to manage standard I/O
--output-filename <filename>โ redirect the stdout, stderr, and stddiag of all processes to a process-unique version of the specified filename. any directories in the filename will automatically be created. each output file will consist offilename.id, where theidwill be the processes' rank inMPI_COMM_WORLD, left-filled with zero's for correct ordering in listings. a relative path value will be converted to an absolute path based on the cwd wherempirunis executed. note that this will not work on environments where the file system on compute nodes differs from that wherempirun(1)is executed. ๐ญ--stdin <rank>โ theMPI_COMM_WORLDrank of the process that is to receive stdin. the default is to forward stdin toMPI_COMM_WORLDrank0, but this option can be used to forward stdin to any process. it is also acceptable to specifynone, indicating that no processes are to receive stdin. ๐--merge-stderr-to-stdoutโ merge stderr to stdout for each process.--tag-outputโ tag each line of output to stdout, stderr, and stddiag with[jobid, MCW_rank]<stdxxx>indicating the process jobid andMPI_COMM_WORLDrank of the process that generated the output, and the channel which generated it.--timestamp-outputโ timestamp each line of output to stdout, stderr, and stddiag. โฐ--xmlโ provide all output to stdout, stderr, and stddiag in an XML format.--xml-file <filename>โ provide all output in XML format to the specified file.--xterm <ranks>โ display the output from the processes identified by theirMPI_COMM_WORLDranks in separatextermwindows. the ranks are specified as a comma-separated list of ranges, with a-1indicating all. a separate window will be created for each specified process.
Note:xtermwill normally terminate the window upon termination of the process running within it. However, by adding a!to the end of the list of specified ranks, the proper options will be provided to ensure thatxtermkeeps the window open after the process terminates, thus allowing you to see the process' output. eachxtermwindow will subsequently need to be manually closed. Note: in some environments,xtermmay require that the executable be in the user's path, or be specified in absolute or relative terms. thus, it may be necessary to specify a local executable as./my_mpi_appinstead of justmy_mpi_app. ifxtermfails to find the executable,mpirunwill hang, but still respond correctly to a ctrl-C. if this happens, please check that the executable is being specified correctly and try again. ๐ซ ๐
๐ฆ to manage files and runtime environment
--path <path>โ<path>that will be used when attempting to locate the requested executables. this is used prior to using the localPATHenvironment variable setting.--prefix <dir>โ prefix directory that will be used to set thePATHandLD_LIBRARY_PATHon the remote node before invoking Open MPI or the target process. see the Remote Execution section, below. ๐--noprefixโ disable the automatic--prefixbehavior.--preload-binaryโ copy the specified executable(s) to remote machines prior to starting remote processes. the executables will be copied to the Open MPI session directory and will be deleted upon completion of the job. ๐--preload-files <files>โ preload the comma-separated list of files to the current working directory of the remote machines where processes will be launched prior to starting those processes.--set-cwd-to-session-dirโ set the working directory of the started processes to their session directory.--wd <dir>โ synonym for-wdir. ๐--wdir<dir> โ bop into <dir> before any of your program's code even breathes. ๐ Peep the Current Working Directory section for the tea on relative paths. Big note though: if--wdirshows up both on the command line and in an application context, the context wins, no discussion. So if the wdir you want is a different path on the backend nodes, you gotta give it as an absolute path that's actually correct for the backend node. Otherwise bestie, it's giving chaos.-x<env> โ yeet the environment variables you name over to the remote nodes before the program runs. ๐ฆ One env variable per-x, that's the rule. You can name variables that already exist, or name brand-new ones with values attached. Like so:
shell$ mpirun -x DISPLAY -x OFILE=/tmp/out ...
Heads up bestie: the parser for-xis not very sophisticated โ it does not even understand quoted values. ๐ญ So the move is: set your variables in the environment, then use-xto export them (not define them). Periodt.
Setting MCA parameters: ๐๏ธ
--gmca<key> <value> โ drop global MCA parameters that apply to all contexts. <key> is the parameter name, <value> is the parameter value. Simple as. โจ--mca<key> <value> โ send arguments to all the various MCA modules. Scroll to the Setting MCA Parameters section for the full lore.
Note: Open MPI will attempt to discern PMIx and PRRTE MCA parameters passed via--mcaand handle them appropriately โ but it may not always guess correctly. ๐ It is best to use--pmixmcaand--prtemcawhen passing MCA parameters to PMIx and PRRTE, respectively. Trust.
--pmixmca<key> <value> โ send arguments to MCA modules inside the PMIx subsystem. See Setting MCA Parameters for more. ๐--prtemca<key> <value> โ send arguments to MCA modules inside the PMIx Reference Runtime Environment (PRRTE) subsystem. Again, see Setting MCA Parameters. ๐--tune<tune_file> โ name a tune file to set arguments for various MCA modules and environment variables. See:
:ref:`Setting MCA parameters and environment variables from file
<man1-mpirun-setting-mca-params-from-file>`
And for the record: --am <arg> is an alias for --tune <arg>. ๐ซถ
For debugging: ๐
--get-stack-tracesโ when you pair this with--timeout,mpirunwill obtain and print out stack traces from all launched processes that are still alive when the timeout expires. Just know that grabbing stack traces can take a little time and produce a lot of output โ especially for large process-count jobs. So like, maybe don't do this casually. ๐ญ--timeout<seconds> โ the max number of secondsmpirunwill run. After this many seconds,mpirunwill abort the launched job and exit with a non-zero exit status. Using--timeoutis also useful when you combine it with--get-stack-traces. ๐ฅ
There are also other options: โจ
--allow-run-as-rootโ letmpirunrun when it's the root user executing it (by default,mpirunaborts when launched as root). Make sure you read the Running as root section for the details, okay? ๐--app<appfile> โ provide an appfile, and ignore all other command line options. Just straight up ignoring them.--continuousโ the job runs until it's explicitly terminated. Run it into the ground, queen.--disable-recoveryโ disables recovery (resets all recovery options to off).--do-not-launchโ do all the necessary prep work to launch the application, but don't actually launch it. All dressed up, no party. ๐--enable-recoveryโ enable recovery from process failure (default: disabled).--leave-session-attachedโ do not detach the back-end daemons used by this application. This lets error messages from the daemons and the underlying environment (e.g., when it fails to launch a daemon) actually get output where you can see them. ๐--max-restarts<num> โ max number of times to restart a failed process.--personality<list> โ comma-separated list of programming model, languages, and containers being used (default =ompi).--ppr<list> โ comma-separated list of number of processes on a given resource type (default: none). It's an alias for--map-by ppr:N:OBJ.--report-child-jobs-separatelyโ return the exit status of the primary job only.--report-events<URI> โ report events to a tool that's listening at the specified URI.--report-pid<channel> โ print outmpirun's PID during startup. The channel has to be either a-to say "send the PID to stdout", a+to say "send the PID to stderr", or a filename to write the PID into. Pick your fighter. ๐--report-uri<channel> โ print outmpirun's URI during startup. Same deal:-means stdout,+means stderr, or a filename to write the URI into.--show-progressโ output a brief, periodic report on launch progress. Little check-ins, love that. ๐ซถ--terminateโ terminate the DVM.--use-hwthread-cpusโ use hardware threads as independent CPUs. ๐ง
Note that if a number of slots is not provided to Open MPI (e.g., via the slots keyword in a hostfile, or from a resource manager such as Slurm), using this option changes the default calculation of number of slots on a node. See PRRTE's definition of "slot" for more details: https://docs.prrte.org/en/latest/placement/overview.html#definition-of-slot
Also note that using this option changes Open MPI's definition of a "processor element" from a processor core to a hardware thread. See PRRTE's definition of a "processor element" for more details: https://docs.prrte.org/en/latest/placement/overview.html#definition-of-pe
The following options are useful for developers; they are not generally useful to most Open MPI users: ๐ ๏ธ
--debug-daemonsโ enable debugging of the run-time daemons used by this application.--debug-daemons-fileโ enable debugging of the run-time daemons used by this application, but store the output in files.--display-devel-mapโ display a more detailed table showing the mapped location of each process prior to launch.--display-topoโ display the topology as part of the process map right before launch.--launch-agentโ name of the executable to be used to start processes on the remote nodes. The default isprted. This option can be used to test new daemon concepts, or to pass options back to the daemons withoutmpirunitself having to see them. For example, specifying a launch agent ofprted --prtemca odls_base_verbose 5lets the developer ask theprtedfor debugging output without clutter frommpirunitself. Iconic dev behavior honestly. ๐ฅ--report-state-on-timeoutโ when paired with the--timeoutcommand line option, report the run-time subsystem state of each process when the timeout expires.
There may be other options listed with mpirun --help. ๐
๐ธ Environment Variables ๐ธ
This is old, hard-coded content. Is this content still current / accurate? Should it be updated and retained, or removed?
MPIEXEC_TIMEOUTโ synonym for the--timeoutcommand line option. โจ
๐ DESCRIPTION ๐
This is old, hard-coded content. Is this content still current / accurate? Should it be updated and retained, or removed?
One invocation of mpirun starts an MPI application running under Open MPI. If your application is single process multiple data (SPMD), you can just specify the application right there on the mpirun command line. Easy. ๐
If your application is multiple instruction multiple data (MIMD) โ so, made up of multiple programs โ you can specify the set of programs and arguments in one of two ways: Extended Command Line Arguments, and Application Context. Both valid, pick your vibe.
An application context describes the MIMD program set, including all the arguments, in a separate file. That file is essentially multiple mpirun command lines, minus the command name itself. Being able to specify different options for different instantiations of a program is another reason you'd reach for an application context. ๐ฆ
Extended command line arguments let you describe the application layout right on the command line, using colons (:) to separate the specification of programs and arguments. Some options are globally set across all specified programs (e.g., --hostfile), while others are specific to a single program (e.g., -n). Very much "some things are for everyone, some things are personal." ๐
๐ฅ๏ธ Specifying Host Nodes ๐ฅ๏ธ
This is old, hard-coded content. Is this content still current / accurate? Should it be updated and retained, or removed?
Host nodes can be identified on the mpirun command line with the --host option, or in a hostfile. โจ
For example:
shell$ mpirun -H aa,aa,bb ./a.out
Launches two processes on node aa and one on bb. ๐
Or, consider the hostfile:
shell$ cat myhostfile
aa slots=2
bb slots=2
cc slots=2
Here we list both the host names (aa, bb, and cc) and how many slots there are for each. So organized of us. ๐
shell$ mpirun --hostfile myhostfile ./a.out
will launch two processes on each of the three nodes.
shell$ mpirun --hostfile myhostfile --host aa ./a.out
will launch two processes, both on node aa.
shell$ mpirun --hostfile myhostfile --host dd ./a.out
will find no hosts to run on and will abort with an error. That is, the specified host dd is not in the specified hostfile. ๐ Rude awakening, but okay.
When you're running under resource managers (e.g., Slurm, Torque, etc.), Open MPI will obtain both the hostnames and the number of slots directly from the resource manager. No manual labor required. ๐
๐ข Specifying Number of Processes ๐ข
This is old, hard-coded content. Is this content still current / accurate? Should it be updated and retained, or removed?
As we just saw, the number of processes to run can be set using the hostfile. But bestie, other mechanisms exist. ๐ฆ
You can specify the number of processes launched as a multiple of the number of nodes or processor packages available. For example:
shell$ mpirun -H aa,bb --map-by ppr:2:package ./a.out
launches processes 0-3 on node aa and processes 4-7 on node bb (assuming aa and bb both contain 4 slots each).
shell$ mpirun -H aa,bb --map-by ppr:2:node ./a.out
launches processes 0-1 on node aa and processes 2-3 on node bb.
shell$ mpirun -H aa,bb --map-by ppr:1:node ./a.out
launches one process per host node. Minimalist. โจ
mpirun -H aa,bb --pernode ./a.out
is the same as --map-by ppr:1:node and --npernode 1. Same vibe, different spelling. ๐
Another alternative is to specify the number of processes with the -n option. Consider now the hostfile:
shell$ cat myhostfile
aa slots=4
bb slots=4
cc slots=4
Now run with myhostfile:
shell$ mpirun --hostfile myhostfile -n 6 ./a.out
...processes 0-3 get dropped onto node aa and processes 4-5 pull up on node bb. And the leftover slots in the hostfile? Yeah those just sit there unused, because -n already said only 6 processes should launch. No notes. ๐
๐บ๏ธ Mapping Processes to Nodes: Using Policies โจ
okay bestie, hold up ๐ This is old, hard-coded content. Is this content still current / accurate? Should it be updated and retained, or removed?
So the examples above are the default mapping of processes to nodes โ that's the vibe you get if you touch nothing. But you can absolutely take the wheel with various mpirun options that describe mapping policies. ๐
Take the same hostfile as before, again with -n 6. Here's the tea on which MPI_COMM_WORLD ranks land on which node for a few mpirun variations:
mpirunโ Node aa:0 1 2 3ยท Node bb:4 5ยท Node cc: (nothing)mpirun --map-by nodeโ Node aa:0 3ยท Node bb:1 4ยท Node cc:2 5mpirun --nolocalโ Node aa: (nothing) ยท Node bb:0 1 2 3ยท Node cc:4 5
The --map-by node option load balances the processes across the available nodes, numbering each process in a round-robin fashion. It's giving โจfairnessโจ.
The --nolocal option stops any processes from being mapped onto the local host (in this case node aa). And yeah, mpirun typically consumes few system resources, so this might seem dramatic โ but --nolocal can genuinely be helpful for launching very large jobs where mpirun may actually need to use noticeable amounts of memory and/or processing time. Main character move when the job is huge. ๐ฅ
Just like -n can ask for fewer processes than there are slots, it can also oversubscribe the slots. For example, same hostfile:
shell$ mpirun --hostfile myhostfile -n 14 ./a.out
This will launch processes 0-3 on node aa, 4-7 on bb, and 8-11 on cc. Then it just adds the remaining two processes to whichever nodes it chooses. Bestie said "surprise me." ๐
You can also set limits on oversubscription. With the same hostfile:
shell$ mpirun --hostfile myhostfile -n 14 --nooversubscribe ./a.out
This will produce an error, since --nooversubscribe prevents oversubscription. Hard no. ๐
Limits to oversubscription can also be specified in the hostfile itself:
shell$ cat myhostfile
aa slots=4 max_slots=4
bb max_slots=4
cc slots=4
The max_slots field specifies such a limit. When it does, the slots value defaults to the limit. So now:
shell$ mpirun --hostfile myhostfile -n 14 ./a.out
This causes the first 12 processes to be launched as before, but the remaining two processes will be forced onto node cc. The other two nodes are protected by the hostfile against oversubscription by this job. Protected, guarded, gatekept. ๐ก๏ธ
Using the --nooversubscribe option can be helpful since Open MPI currently does not get max_slots values from the resource manager.
And of course, -n can also be used with the -H or -host option. For example:
shell$ mpirun -H aa,bb -n 8 ./a.out
launches 8 processes. Since only two hosts are specified, after the first two processes are mapped โ one to aa and one to bb โ the remaining processes oversubscribe the specified hosts.
And here's a MIMD example, because we love range ๐ :
shell$ mpirun -H aa -n 1 hostname : -H bb,cc -n 2 uptime
This will launch process 0 running hostname on node aa, and processes 1 and 2 each running uptime on nodes bb and cc, respectively. Different programs, different nodes, one command. Iconic.
๐ฎ Mapping, Ranking, and Binding: Oh My! ๐ฆ
hehe okay another heads-up bestie ๐ This is old, hard-coded content. Is this content still current / accurate? Should it be updated and retained, or removed?
Open MPI employs a three-phase procedure for assigning process locations and ranks:
- Mapping: Assigns a default location to each process
- Ranking: Assigns an
MPI_COMM_WORLDrank value to each process - Binding: Constrains each process to run on specific processors
The mapping step is what assigns a default location to each process, based on the mapper being employed. Mapping by slot, node, and sequentially results in the assignment of the processes to the node level. Meanwhile, mapping by object lets the mapper assign the process to an actual object on each node. Different flavors, same energy.
Note that the location assigned to the process is independent of where it will be bound โ that assignment is used solely as input to the binding algorithm. They're two separate steps, fr fr.
The mapping of processes to nodes can be defined not just with general policies but also, if necessary, using arbitrary mappings that cannot be described by a simple policy. For that you can use the "sequential mapper," which reads the hostfile line by line, assigning processes to nodes in whatever order the hostfile specifies. Use the ---map-by seq option. For example, using the same hostfile as before:
shell$ mpirun -hostfile myhostfile --map-by seq ./a.out
This will launch three processes โ one on each of nodes aa, bb, and cc, respectively. The slot counts don't matter; one process is launched per line on whatever node is listed on the line. Slots who? Never heard of her. ๐
Another way to specify arbitrary mappings is with a rankfile, which gives you detailed control over process binding as well. Rankfiles are discussed below. ๐
The second phase focuses on the ranking of the process within the job's MPI_COMM_WORLD. Open MPI separates this from the mapping procedure to allow more flexibility in the relative placement of MPI processes. This is best illustrated by considering the following cases, where we used the --np 8 --map-by ppr:2:package --host aa:4,bb:4 option:
--rank-by fill(i.e., dense packing) Default โ Node aa:0 1 | 2 3ยท Node bb:4 5 | 6 7--rank-by span(i.e., sparse or load balanced packing) โ Node aa:0 4 | 1 5ยท Node bb:2 6 | 3 7--rank-by nodeโ Node aa:0 2 | 4 6ยท Node bb:1 3 | 5 7
Ranking by fill assigns MCW ranks in a simple progression across each node. Ranking by span and by slot provide the identical result โ a round-robin progression of the packages across all nodes before returning to the first package on the first node. Ranking by node assigns MCW ranks iterating first across nodes then by package.
The binding phase is where each process actually gets bound to a given set of processors. This can improve performance if the operating system is placing processes suboptimally. For example, it might oversubscribe some multi-core processor packages, leaving other packages idle โ which can lead processes to contend unnecessarily for common resources. Or, it might spread processes out too widely; that can be suboptimal if application performance is sensitive to interprocess communication costs. Binding can also keep the operating system from migrating processes excessively, regardless of how optimally those processes were placed to begin with. Stay. Put. ๐ซถ
The processors to be used for binding can be identified in terms of topological groupings โ e.g., binding to an l3cache will bind each process to all processors within the scope of a single L3 cache within their assigned location. So if a process is assigned by the mapper to a certain package, then a --bind-to l3cache directive will cause the process to be bound to the processors that share a single L3 cache within that package. Nested, cute, very demure.
Alternatively, processes can be mapped and bound to specified cores using the --map-by pe-list= option. For example, --map-by pe-list=0,2,5 will map three processes, all three of which will be bound to logical cores 0,2,5. If you intend to bind each of the three processes to different cores, then the :ordered qualifier can be used like --map-by pe-list=0,2,5:ordered. In this example, the first process on a node will be bound to CPU 0, the second process on the node will be bound to CPU 2, and the third process on the node will be bound to CPU 5. Order matters bestie. ๐
Finally, --report-bindings can be used to report bindings. Receipts.
As an example, consider a node with two processor packages, each comprised of four cores, and each of those cores contains one hardware thread. The --report-bindings option shows the binding of each process in a descriptive manner. Below are some examples.
shell$ mpirun --np 4 --report-bindings --map-by core --bind-to core
[...] Rank 0 bound to package[0][core:0]
[...] Rank 1 bound to package[0][core:1]
[...] Rank 2 bound to package[0][core:2]
[...] Rank 3 bound to package[0][core:3]
In the above case, the processes bind to successive cores. Slay.
shell$ mpirun --np 4 --report-bindings --map-by package --bind-to package
[...] Rank 0 bound to package[0][core:0-3]
[...] Rank 1 bound to package[0][core:0-3]
[...] Rank 2 bound to package[1][core:4-7]
[...] Rank 3 bound to package[1][core:4-7]
In the above case, processes bind to all cores on successive packages. The processes cycle through the processor packages in a round-robin fashion as many times as are needed. And by default, the processes are ranked in a fill manner. That's the whole vibe check, passed. โ
...and then you get this, which is chef's kiss:
shell$ mpirun --np 4 --report-bindings --map-by package --bind-to package --rank-by span
[...] Rank 0 bound to package[0][core:0-3]
[...] Rank 1 bound to package[1][core:4-7]
[...] Rank 2 bound to package[0][core:0-3]
[...] Rank 3 bound to package[1][core:4-7]
The above case demonstrates the difference in ranking when the span qualifier is used instead of the default.
And watch what happens when you ask for two processor elements per slot ๐ซถ:
shell$ mpirun --np 4 --report-bindings --map-by slot:PE=2 --bind-to core
[...] Rank 0 bound to package[0][core:0-1]
[...] Rank 1 bound to package[0][core:2-3]
[...] Rank 2 bound to package[0][core:4-5]
[...] Rank 3 bound to package[0][core:6-7]
So in the above case, the output is literally telling us that 2 cores have been bound per process. Like, specifically: the mapping by slot with the PE=2 qualifier said "bestie, each slot (i.e., each process) eats two processor elements". And by default Open MPI defines "processor element" as "core", so the --bind-to core made each process get bound to both of the cores it was mapped to. No cap. ๐
Swap that out for hardware threads and:
shell$ mpirun --np 4 --report-bindings --map-by slot:PE=2 --use-hwthread-cpus
[...]] Rank 0 bound to package[0][hwt:0-1]
[...]] Rank 1 bound to package[0][hwt:2-3]
[...]] Rank 2 bound to package[0][hwt:4-5]
[...]] Rank 3 bound to package[0][hwt:6-7]
Same deal as before, except we replaced --bind-to core with --use-hwthread-cpus. The --use-hwthread-cpus gets converted into --bind-to hwthread and tells the --report-bindings output to show the hardware threads that a process is bound to. In this case, processes are bound to 2 hardware threads per process. ๐ฆ
And if you want the binding off off:
shell$ mpirun --np 4 --report-bindings --bind-to none
[...] Rank 0 is not bound (or bound to all available processors)
[...] Rank 1 is not bound (or bound to all available processors)
[...] Rank 2 is not bound (or bound to all available processors)
[...] Rank 3 is not bound (or bound to all available processors)
Yep โ binding is turned off, and it reports itself as such. Iconic honestly.
Open MPI's support for process binding depends on the underlying operating system. So yeah, certain process binding options may not be available on every system. Vibe check your OS first, bestie. ๐ญ
Process binding can also be set with MCA parameters. Their usage is less convenient than that of mpirun options. On the other hand, MCA parameters can be set not only on the mpirun command line, but alternatively in a system or user mca-params.conf file or as environment variables, as described in the Setting MCA Parameters. These are MCA parameters for the PRRTE runtime, so the command line argument --prtemca (yes โ prte with a single r, not two r's) must be used to pass the MCA parameter key/value pair. Alternatively, the MCA parameter key/value pair may be specific on the command line by prefixing the key with PRTE_MCA_ (again, that is not a typo: PRTE not PRRTE). Some examples include:
--map-by coreโ PRRTE MCA parameter keyrmaps_default_mapping_policy, valuecore--map-by packageโ PRRTE MCA parameter keyrmaps_default_mapping_policy, valuepackage--rank-by fillโ PRRTE MCA parameter keyrmaps_default_ranking_policy, valuefill--bind-to coreโ PRRTE MCA parameter keyhwloc_default_binding_policy, valuecore--bind-to packageโ PRRTE MCA parameter keyhwloc_default_binding_policy, valuepackage--bind-to noneโ PRRTE MCA parameter keyhwloc_default_binding_policy, valuenone
โจ Defaults for Mapping, Ranking, and Binding โจ
This is old, hard-coded content Is this content still current / accurate? Should it be updated and retained, or removed?
So if you don't specify each of --map-by, --rank-by, and --bind-to, the runtime just picks defaults for you, and here's the whole tea ๐:
- If no options are specified then
- If the number of processes is less than or equal to 2, then:
--map-byiscore--bind-toiscore--rank-byisspan- Result:
--map-by core --bind-to core --rank-by span
- Otherwise:
--map-byispackage--bind-toispackage--rank-byisfill- Result:
--map-by package --bind-to package --rank-by fill
- If the number of processes is less than or equal to 2, then:
- If only
--map-by OBJ(where OBJ is something likecore) is specified, then:--map-byspecifiedOBJ--bind-touses the sameOBJas--map-by--rank-bydefaults tofill- Result:
--map-by OBJ --bind-to OBJ --rank-by fill
- If only
--bind-to OBJ(where OBJ is something likecore) is specified, then:--map-byis eithercoreorpackagedepending on the number of processes--bind-tospecifiedOBJ--rank-bydefaults tofill- Result:
--map-by OBJ --bind-to OBJ --rank-by fill
- If
--map-by OBJ1 --bind-to OBJ2, then:--map-byspecifiedOBJ1--bind-tospecifiedOBJ2--rank-bydefaults tofill- Result:
--map-by OBJ2 --bind-to OBJ2 --rank-by fill
Picture 2 identical hosts (hostA and hostB) with 2 packages (denoted by []) each with 8 cores (denoted by /../) and 2 hardware threads per core (denoted by a .). ๐
Default of --map-by core --bind-to core --rank-by span when the number of processes is less than or equal to 2:
shell$ mpirun --np 2 --host hostA:4,hostB:2 ./a.out
R0 hostA [BB/../../../../../../..][../../../../../../../..]
R1 hostA [../BB/../../../../../..][../../../../../../../..]
Default of --map-by package --bind-to package --rank-by fill when the number of processes is greater than 2:
shell$ mpirun --np 4 --host hostA:4,hostB:2 ./a.out
R0 hostA [BB/BB/BB/BB/BB/BB/BB/BB][../../../../../../../..]
R1 hostA [BB/BB/BB/BB/BB/BB/BB/BB][../../../../../../../..]
R2 hostA [../../../../../../../..][BB/BB/BB/BB/BB/BB/BB/BB]
R3 hostA [../../../../../../../..][BB/BB/BB/BB/BB/BB/BB/BB]
If only --map-by OBJ is specified, then it implies --bind-to OBJ --rank-by fill. The example below results in --map-by hwthread --bind-to hwthread --rank-by fill:
shell$ mpirun --np 4 --map-by hwthread --host hostA:4,hostB:2 ./a.out
R0 hostA [B./../../../../../../..][../../../../../../../..]
R1 hostA [.B/../../../../../../..][../../../../../../../..]
R0 hostA [../B./../../../../../..][../../../../../../../..]
R1 hostA [../.B/../../../../../..][../../../../../../../..]
If only --bind-to OBJ is specified, then --map-by is determined by the number of processes and --rank-by fill. The example below results in --map-by package --bind-to core --rank-by fill:
shell$ mpirun --np 4 --bind-to core --host hostA:4,hostB:2 ./a.out
R0 hostA [BB/../../../../../../..][../../../../../../../..]
R1 hostA [../BB/../../../../../..][../../../../../../../..]
R2 hostA [../../../../../../../..][BB/../../../../../../..]
R3 hostA [../../../../../../../..][../BB/../../../../../..]
The mapping pattern might be better seen if we change the default --rank-by from fill to span. First, the processes are mapped by package iterating between the two, marking a core at a time. Next, the processes are ranked in a spanning manner that load balances them across the object they were mapped against. Finally, the processes are bound to the core that they were mapped against. ๐ง
shell$ mpirun --np 4 --bind-to core --rank-by span --host hostA:4,hostB:2 ./a.out
R0 hostA [BB/../../../../../../..][../../../../../../../..]
R1 hostA [../../../../../../../..][BB/../../../../../../..]
R2 hostA [../BB/../../../../../..][../../../../../../../..]
R3 hostA [../../../../../../../..][../BB/../../../../../..]
๐ Rankfiles ๐
This is old, hard-coded content Is this content still current / accurate? Should it be updated and retained, or removed?
Rankfiles are text files that spell out detailed info about how individual processes should be mapped to nodes, and to which processor(s) they should be bound. Each line of a rankfile specifies the location of one process (for MPI jobs, the process' "rank" refers to its rank in MPI_COMM_WORLD). The general form of each line in the rankfile is:
rank <N>=<hostname> slot=<slot list>
For example:
shell$ cat myrankfile
rank 0=aa slot=1:0-2
rank 1=bb slot=0:0,1
rank 2=cc slot=2-3
shell$ mpirun -H aa,bb,cc,dd --map-by rankfile:file=myrankfile ./a.out
Which means that:
- Rank 0 runs on node
aa, bound to logical package 1, cores 0-2. - Rank 1 runs on node
bb, bound to logical package 0, cores 0 and 1. - Rank 2 runs on node
cc, bound to logical cores 2 and 3.
Note that only logical processor locations are supported. By default, the values you give are assumed to be cores. If you intend to specify specific hardware threads, then you must add the :hwtcpus qualifier to the --map-by command line option (e.g., --map-by rankfile:file=myrankfile:hwtcpus). โญ
If the binding specification overlaps between any two ranks, then an error occurs. If you intend to allow processes to share the same logical processing unit, then you must pass the --bind-to :overload-allowed command line option to tell the runtime to ignore this check. ๐
The hostnames that got listed up there are what we call โabsoluteโ โ meaning yes bestie, they're actual, real, resolvable hostnames. Actual addresses. Periodt. ๐
But hostnames can also be โrelativeโ, meaning they're specified in relation to an externally-specified list of hostnames (like, say, from mpirun's --host argument, a hostfile, or a job scheduler). iykyk โจ
That โrelativeโ form looks like +n<X>, where X is an integer that says "gimme the Xth hostname in the set of all available hostnames," and the indexing starts from 0. For example:
shell$ cat myrankfile
rank 0=+n0 slot=1:0-2
rank 1=+n1 slot=0:0,1
rank 2=+n2 slot=2-3
shell$ mpirun -H aa,bb,cc,dd --map-by rankfile:file=myrankfile ./a.out
Every package/core slot location is specified as a logical index, no cap.
๐ซถ Note: The Open MPI v1.6 series used physical indexes. Starting in Open MPI v5.0 only logical indexes are supported and the rmaps_rank_file_physical MCA parameter is no longer recognized. She's gone, bestie, she doesn't answer texts anymore ๐
You can use tools such as Hwloc's lstopo(1) to find the logical indexes of packages and cores. Slay. ๐ฅ
๐ง Application Context or Executable Program?
๐ This is old, hard-coded content Is this content still current / accurate? Should it be updated and retained, or removed?
To tell these two different forms apart, mpirun peeks at the command line looking for the --app option. If it's specified, then the file named on the command line is assumed to be an application context. If it's not specified, then the file is assumed to be an executable program. Simple as that. ๐
๐ Locating Files
๐ This is old, hard-coded content Is this content still current / accurate? Should it be updated and retained, or removed?
If no relative or absolute path is specified for a file, Open MPI will first go looking for files by searching the directories specified by the --path option. If there's no --path option set, or if the file just isn't found at the --path location, then Open MPI will search the user's PATH environment variable as it's defined on the source node(s). Okay so it's giving detective energy ๐ต๏ธโโ๏ธ
If a relative directory is specified, it must be relative to the initial working directory determined by the specific starter used. Like, when you're using the ssh starter, the initial directory is $HOME by default. Other starters may set the initial directory to the current working directory from the invocation of mpirun. ๐
๐ Current Working Directory
๐ This is old, hard-coded content Is this content still current / accurate? Should it be updated and retained, or removed?
The --wdir mpirun option (and its synonym, --wd) lets you change to an arbitrary directory before the program is invoked. Iconic. It can also be used in application context files to specify working directories on specific nodes and/or for specific applications. ๐
If the --wdir option shows up in both a context file and on the command line, the context file directory will override the command line value. Context file wins, sorry not sorry ๐
If the -wdir option is specified, Open MPI will attempt to change to the specified directory on all of the remote nodes. If this fails, mpirun will abort. Like, it's not gonna just vibe through that one, bestie, it's over ๐ญ
If the -wdir option is not specified, Open MPI will send the directory name where mpirun was invoked to each of the remote nodes. The remote nodes will try to change to that directory. If they can't (e.g., if the directory doesn't exist on that node), then Open MPI will use the default directory determined by the starter.
All of this directory changing happens before the user's program is invoked โ it does not wait until MPI_INIT(3) is called. So it's early, it's prompt, it has main character energy and it shows up on time. โฐโจ
๐บ Standard I/O
๐ This is old, hard-coded content Is this content still current / accurate? Should it be updated and retained, or removed?
Open MPI directs UNIX standard input to /dev/null on all processes except the MPI_COMM_WORLD rank 0 process. The MPI_COMM_WORLD rank 0 process inherits standard input from mpirun. Rank 0 is the chosen one, the main character, the one holding the aux cord ๐ง
๐ Note: The node that invoked mpirun need not be the same as the node where the MPI_COMM_WORLD rank 0 process resides. Open MPI handles the redirection of mpirun's standard input to the rank 0 process. She handles it. She's got it. ๐ซถ
Open MPI directs UNIX standard output and error from remote nodes to the node that invoked mpirun and prints it on the standard output/error of mpirun. Local processes inherit the standard output/error of mpirun and transfer to it directly.
So yeah, it's totally possible to redirect standard I/O for Open MPI applications by using the typical shell redirection procedure on mpirun. For example:
shell$ mpirun -n 2 my_app < my_input > my_output
Lowkey important note: in this example, only the MPI_COMM_WORLD rank 0 process will receive the stream from my_input on stdin. The stdin on all the other nodes will be tied to /dev/null. (Not them getting ghosted by stdin ๐) However, the stdout from all nodes will be collected into the my_output file. So everybody's talking, only one of them is listening. It's giving group chat. ๐ฑ
๐ก Signal Propagation
๐ This is old, hard-coded content Is this content still current / accurate? Should it be updated and retained, or removed?
When mpirun receives a SIGTERM and SIGINT, it will attempt to kill the entire job by sending all processes in the job a SIGTERM, waiting a small number of seconds, then sending all processes in the job a SIGKILL. Like, it gives them a heads up first โ polite! โ and then it does NOT play around. ๐๐ฅ
SIGUSR1 and SIGUSR2 signals received by mpirun are propagated to all processes in the job.
A SIGTSTOP signal to mpirun will cause a SIGSTOP signal to be sent to all of the programs started by mpirun, and likewise a SIGCONT signal to mpirun will cause a SIGCONT sent. Matching set, bestie, we love symmetry โจ
Other signals are not currently propagated by mpirun. She said "not those ones." ๐ โโ๏ธ
๐ชฆ Process Termination / Signal Handling
๐ This is old, hard-coded content Is this content still current / accurate? Should it be updated and retained, or removed?
During the run of an MPI application, if any process dies abnormally (either exiting before invoking MPI_FINALIZE(3), or dying as the result of a signal), mpirun will print out an error message and kill the rest of the MPI application. It's giving "if one of us goes down we ALL go down" ๐ญ
User signal handlers should probably avoid trying to cleanup MPI state. Like, don't do it. Open MPI is currently not async-signal-safe; see MPI_INIT_THREAD(3) for details about MPI_THREAD_MULTIPLE and thread safety. For example, if a segmentation fault occurs in MPI_SEND(3) (perhaps because a bad buffer was passed in) and a user signal handler is invoked, and if this user handler attempts to invoke MPI_FINALIZE(3), Bad Things could happen since Open MPI was already โinโ MPI when the error occurred. ๐
So: since mpirun will notice that the process died due to a signal, it's probably not necessary (and honestly the safest move) for the user to only clean up non-MPI state. Touch nothing that belongs to MPI. Hands off. ๐
๐ฑ Process Environment
๐ This is old, hard-coded content Is this content still current / accurate? Should it be updated and retained, or removed?
Processes in the MPI application inherit their environment from the PRRTE daemon on the node where they're running. That environment is typically inherited from the user's shell. On remote nodes, the exact environment is determined by the boot MCA module used. The rsh launch module, for example, uses either rsh/ssh to launch the PRRTE daemon on remote nodes, and typically executes one or more of the user's shell-setup files before launching the PRRTE daemon. So your .bashrc is lowkey part of the pipeline, bestie ๐โจ
When you're running dynamically linked applications which require the LD_LIBRARY_PATH environment variable to be set, care must be taken to ensure that it is correctly set when booting Open MPI. Genuinely, be careful here.
See the Remote Execution section for more details. ๐
๐ฐ๏ธ Remote Execution
๐ This is old, hard-coded content Is this content still current / accurate? Should it be updated and retained, or removed?
Open MPI requires that the PATH environment variable be set to find executables on remote nodes. (This is typically only necessary in rsh- or ssh-based environments โ batch/scheduled environments typically copy the current environment to the execution of remote jobs, so if the current environment has PATH and/or LD_LIBRARY_PATH set properly, the remote nodes will also have it set properly. So sometimes it's fine, sometimes it's a whole thing. ๐)
If Open MPI was compiled with shared library support, it may also be necessary to have the LD_LIBRARY_PATH environment variable set on remote nodes as well โ especially to find the shared libraries required to run user MPI applications.
However (and this is the plot twist), it is not always desirable or possible to edit shell startup files to set PATH and/or LD_LIBRARY_PATH. That's literally why the --prefix option exists โ it's provided for some simple configurations where this is not possible. She's the backup plan and she ate ๐
The --prefix option takes a single argument: the base directory on the remote node where Open MPI is installed. Open MPI will use this directory to set the remote PATH and LD_LIBRARY_PATH before executing any Open MPI or user applications. This lets you run Open MPI jobs without having pre-configured PATH and LD_LIBRARY_PATH on the remote nodes. Obsessed, honestly. ๐ฅฐ
Here's the mechanics, bestie, stay with me: Open MPI adds the basename of the current node's $bindir (the directory where Open MPI's executables were installed) to the prefix and uses that to set the PATH on the remote node. Similarly, Open MPI adds the basename of the current node's $libdir (the directory where Open MPI's libraries were installed) to the prefix and uses that to set the LD_LIBRARY_PATH on the remote node. For example:
- Local
bindir:/local/node/directory/bin - Local
libdir:/local/node/directory/lib64
If the following command line is used:
shell$ mpirun --prefix /remote/node/directory
then Open MPI will add /remote/node/directory/bin to the PATH and /remote/node/directory/lib64 to the LD_LIBRARY_PATH on the remote node before attempting to execute anything. Slay. โจ
Now, the --prefix option is not sufficient if the installation paths on the remote node are different than the local node (e.g., if /lib is used on the local node, but /lib64 is used on the remote node), or if the installation paths are something other than a subdirectory under a common prefix. Like, she has limits. She's not a miracle worker. ๐ญ
Note that executing mpirun via an absolute pathname is equivalent to specifying --prefix without the last subdirectory in the absolute pathname to mpirun. For example:
shell$ /usr/local/bin/mpirun ...
is equivalent to
shell$ mpirun --prefix /usr/local
Same vibes, different font. ๐
๐ค Exported Environment Variables
๐ This is old, hard-coded content Is this content still current / accurate? Should it be updated and retained, or removed?
Okay so like, the last lil' bit of the environment saga, then we get into the good stuff ๐
All environment variables that are named in the form OMPI_* get auto-magically exported to your new processes on the local and the remote nodes. No cap, it just happens. You can also set/forward environmental parameters yourself using the MCA parameter mca_base_env_list. Real talk tho: the -x option to mpirun has been deprecated, but the syntax of the MCA param follows that prior example. And here's the tea โ while the syntax of the -x option and the MCA param does let you define new variables, the parser for these options is currently not very sophisticated โ it does not even understand quoted values. ๐ญ So users are advised to set variables in the environment and use the option to export them; not to define them. Periodt.
โจ Setting MCA Parameters โจ
๐ง This is old, hard-coded content โ is this content still current / accurate? Should it be updated and retained, or removed?
The --mca switch is your bestie for passing parameters to the various MCA (that's Modular Component Architecture, iykyk) modules. MCA modules have a direct impact on MPI programs because they let you set tunable parameters at run time โ like which BTL communication device driver to use, what parameters to pass to that BTL, etc. โจ
The --mca switch takes two arguments: <key> and <value>. The <key> argument generally specifies which MCA module will receive the value. For example, the <key> btl is used to select which BTL to be used for transporting MPI messages. The <value> argument is the value that is passed. For example:
shell$ mpirun --mca btl tcp,self -n 1 my_mpi_app
This tells Open MPI to use the tcp and self BTLs, and to run a single copy of my_mpi_app an allocated node.
shell$ mpirun --mca btl self -n 1 my_mpi_app
Tells Open MPI to use the self BTL, and to run a single copy of my_mpi_app an allocated node.
The --mca switch can be used multiple times to specify different <key> and/or <value> arguments. If the same <key> is specified more than once, the <value>s are concatenated with a comma (,) separating them. ๐
Note that the --mca switch is simply a shortcut for setting environment variables. The same effect may be accomplished by setting corresponding environment variables before running mpirun. The form of the environment variables that Open MPI sets is:
OMPI_MCA_<key>=<value>
Thus, the --mca switch overrides any previously set environment variables. The --mca settings similarly override MCA parameters set in the $OPAL_PREFIX/etc/openmpi-mca-params.conf or $HOME/.openmpi/mca-params.conf file. ๐
Unknown <key> arguments are still set as environment variable โ they are not checked (by mpirun) for correctness. Illegal or incorrect <value> arguments may or may not be reported โ it depends on the specific MCA module. ๐
To find the available component types under the MCA architecture, or to find the available parameters for a specific component, use the ompi_info command. See the ompi_info(1) man page for detailed information on this command.
โจ Setting MCA parameters and environment variables from file โจ
๐ง This is old, hard-coded content โ is this content still current / accurate? Should it be updated and retained, or removed?
The --tune command line option and its synonym --mca mca_base_envar_file_prefix allows a user to set MCA parameters and environment variables with the syntax described below. This option requires a single file or list of files separated by โ,โ to follow. ๐ธ
A valid line in the file may contain zero or more -x or --mca. The following patterns are supported:
--mca var val--mca var "val"-x var=val-x var
If any argument is duplicated in the file, the last value read will be used.
MCA parameters and environment specified on the command line have higher precedence than variables specified in the file. โจ
โจ Running as root โจ
๐ง This is old, hard-coded content โ is this content still current / accurate? Should it be updated and retained, or removed?
โ ๏ธ Warning: The Open MPI team strongly advises against executing mpirun as the root user. MPI applications should be run as regular (non-root) users.
mpirun will refuse to run as root by default. ๐
To override this default, you can add the --allow-run-as-root option to the mpirun command line, or you can set the environmental parameters OMPI_ALLOW_RUN_AS_ROOT=1 and OMPI_ALLOW_RUN_AS_ROOT_CONFIRM=1. Note that it takes setting two environment variables to effect the same behavior as --allow-run-as-root in order to stress the Open MPI teamโs strong advice against running as the root user. Like, they really want you to feel it. ๐ญ
After extended discussions with communities who use containers (where running as the root user is the default), there was a persistent desire to be able to enable root execution of mpirun via an environmental control (vs. the existing --allow-run-as-root command line parameter). The compromise of using two environment variables was reached: it allows root execution via an environmental control, but it conveys the Open MPI teamโs strong recommendation against this behavior. ๐ค
โจ Exit status โจ
๐ง This is old, hard-coded content โ is this content still current / accurate? Should it be updated and retained, or removed?
There is no standard definition for what mpirun should return as an exit status. After considerable discussion, we settled on the following method for assigning the mpirun exit status (note: in the following description, the โprimaryโ job is the initial application started by mpirun โ all jobs that are spawned by that job are designated โsecondaryโ jobs): ๐ซถ
- If all processes in the primary job normally terminate with exit status
0,mpirunreturns0. - If one or more processes in the primary job normally terminate with non-zero exit status,
mpirunreturns the exit status of the process with the lowestMPI_COMM_WORLDrank to have a non-zero status. - If all processes in the primary job normally terminate with exit status
0, and one or more processes in a secondary job normally terminate with non-zero exit status,mpirun:- Returns the exit status of the process with the lowest
MPI_COMM_WORLDrank in the lowestjobidto have a non-zero status, and - Outputs a message summarizing the exit status of the primary and all secondary jobs.
- Returns the exit status of the process with the lowest
- If the command line option
--report-child-jobs-separatelyis set, we will return only the exit status of the primary job. Any non-zero exit status in secondary jobs will be reported solely in a summary print statement.
By default, the job will abort when any process terminates with non-zero status. The MCA parameter --prtemca state_base_error_non_zero_exit can be set to โfalseโ (or โ0โ) to cause Open MPI to not abort a job if one or more processes return a non-zero status. In that situation the Open MPI records and notes that processes exited with non-zero termination status to report the appropriate exit status of mpirun (per bullet points above). ๐
โจ EXAMPLES โจ
๐ง This is old, hard-coded content โ is this content still current / accurate? Should it be updated and retained, or removed?
Be sure also to see the examples throughout the sections above. ๐
shell$ mpirun -n 4 --mca btl tcp,sm,self prog1
Run 4 copies of prog1 using the tcp, sm (shared memory), and self (process loopback) BTLโs for the transport of MPI messages. Slay. ๐ฅ
โจ RETURN VALUE โจ
๐ง This is old, hard-coded content โ is this content still current / accurate? Should it be updated and retained, or removed?
mpirun returns 0 if all processes started by mpirun exit after calling MPI_FINALIZE(3). A non-zero value is returned if an internal error occurred in mpirun, or one or more processes exited before calling MPI_FINALIZE(3). If an internal error occurred in mpirun, the corresponding error code is returned. In the event that one or more processes exit before calling MPI_FINALIZE(3), the return value of the MPI_COMM_WORLD rank of the process that mpirun first notices died before calling MPI_FINALIZE(3) will be returned. Note that, in general, this will be the first process that died but is not guaranteed to be so. ๐
If the --timeout command line option is used and the timeout expires before the job completes (thereby forcing mpirun to kill the job) mpirun will return an exit status equivalent to the value of ETIMEDOUT (which is typically 110 on Linux and OS X systems). โฐ
See also: MPI_INIT(3), MPI_INIT_THREAD(3), MPI_FINALIZE(3), ompi_info(1)
๐ Copyright
2003-2026, The Open MPI Community
and that's the whole page bestie!! ๐โจ This lil' icon is from Sep 10, 2026, and it's version MPIRUN(1) โ go forth and spawn processes responsibly, you absolute main character. ๐ฆ๐ ๐
๐ฆ where this page comes from
- ubuntu stonking: openmpi-bin 5.0.10-6 ยท other
- ๐ girlified by deepseek-ai/DeepSeek-V4.1-Flash on : a language model's rewrite of the original, under its terms