MIPECHECKSANITY(1)

πŸ“¦
version 1.1 Β· 2 versions
, in debian bookworm, debian trixie, ubuntu jammy, ubuntu noble

✨ NAME ✨

okay bestie, meet mipeCheckSanity.pl β€” it's the sanity check for your MIPE file, and it's lowkey hyperfocused on what's inside (the contents, the vibes, the substance) rather than the form of it. like, the shape stuff? that's a whole other thing you can check with xmllint. this one is doing the deep emotional work πŸ’…

and it's based on MIPE version v0.9, so like, that's the era we're living in, no cap.

the arguments it eats:

  • mipe_file β€” your actual MIPE file, the star of the show πŸ‘‘
  • (optional) a list of PCR IDs β€” only if you wanna narrow it down, otherwise it's giving full-scan energy

πŸŽ€ SYNOPSIS πŸŽ€

mipe2genotypes.pl your_file.mipe <pcr_id1> <pcr_id2>

periodt. that's the whole incantation. swap in your file, drop in your PCR IDs, go off. ✨


🌈 ADDITIONAL INFO 🌈

wanna know more? the lore lives at http://mipe.sourceforge.net β€” go read, iykyk πŸ¦‹


πŸ’– AUTHOR πŸ’–

this icon was written by Jan Aerts (jan.aerts@bbsrc.ac.uk) β€” say thank you, fr fr 🫢


and that's the whole page, bestie! this one's rocking perl v5.32.1 and it was dated 2021-02-21, so it's been out here serving these MIPE checks since then. go forth and validate πŸŒΈπŸ’œ

πŸ“¦ where this page comes from