mia-2dmyocard-segment(1)

📦
version 2.4.7 · 3 versions
, in ubuntu jammy, ubuntu resolute, ubuntu stonking

🫀 mia-2dmyocard-segment 💖

okay so bestie, welcome to the manual page for mia-2dmyocard-segment, and yes it lives in the General Commands Manual section, (1) — aka the "just run me in your shell" section. ✨ Buckle up, it's giving very much work-in-progress energy. 🚧

🏷️ NAME

mia-2dmyocard-segment — Work in progress 🛠️

✨ SYNOPSIS

mia-2dmyocard-segment -i <in-file> -o <out-file> [options]

📖 DESCRIPTION

So like, mia-2dmyocard-segment — this program is work in progress. 💅 That's it. That's the description. Fr fr, no cap. 🙈

🎀 OPTIONS 🎀

💾 File-IO

  • -i, --in-file — (input, required); string — the input perfusion data set. Required, bestie, you can't skip it. 🩸
  • -o, --out-file — (output, required); io — the output myocardial mask. Also required! For supported file types see PLUGINS:2dimage/io. 🎭
  • -f, --save-features — (output); string — save ICA features to files with this name base. ✨

🆘 Help & Info

  • -V, --verbose — =warning — verbosity of output, prints messages of the given level and higher priorities. The supported priorities, starting at the lowest level, are:
    • trace — Function call trace 🔍
    • debug — Debug output 🐛
    • info — Low level messages ℹ️
    • message — Normal messages 💬
    • warning — Warnings ⚠️
    • fail — Report test failures 💀
    • error — Report errors 🚨
    • fatal — Report only fatal errors 🪦
  • --copyright — print copyright information 📜
  • -h, --help — print this help 🙋
  • -?, --usage — print a short help ⚡
  • --version — print the version number and exit 🏷️

🧠 ICA

  • --fastica — =internal — the FastICA implementation to be used. For supported plugins see PLUGINS:fastica/implementation. 🌀
  • -C, --components — =0 — ICA components. 0 = automatic estimation testing 4 and 5. 🔢
  • --normalize — normalized ICs. 🧼
  • --no-meanstrip — don't strip the mean from the mixing curves. 🚫📉
  • -k, --skip — =2 — skip images at the beginning of the series, because they are of other modalities. ⏭️
  • -m, --max-ica-iter — =400 — maximum number of iterations in ICA. 🔁

⚙️ Processing

  • --threads — =-1 — maximum number of threads to use for processing. This number should be lower than or equal to the number of logical processor cores in the machine. (-1: automatic estimation). 🧵

🔌 PLUGINS: 2dimage/io

the file-type glow-up menu, bestie 🌈

  • bmp — BMP 2D-image input/output support. The plug-in supports reading and writing of binary images and 8-bit gray scale images. Read-only support is provided for 4-bit gray scale images. The color table is ignored and the pixel values are taken as literal gray scale values. 🎨
    • Recognized file extensions: .BMP, .bmp
    • Supported element types:
      • binary data
      • unsigned 8 bit
  • datapool — Virtual IO to and from the internal data pool. 🏊
    • Recognized file extensions: .@
  • dicom — 2D image io for DICOM. 🏥
    • Recognized file extensions: .DCM, .dcm
    • Supported element types:
      • signed 16 bit
      • unsigned 16 bit
  • exr — a 2dimage io plugin for OpenEXR images. 🌟
    • Recognized file extensions: .EXR, .exr
    • Supported element types:
      • unsigned 32 bit
      • floating point 32 bit
  • jpg — a 2dimage io plugin for jpeg gray scale images. 📷
    • Recognized file extensions: .JPEG, .JPG, .jpeg, .jpg
    • Supported element types:
      • unsigned 8 bit
  • png — a 2dimage io plugin for png images. 🖼️
    • Recognized file extensions: .PNG, .png
    • Supported element types:
      • binary data
      • unsigned 8 bit
      • unsigned 16 bit
  • raw — RAW 2D-image output support. 🧱
    • Recognized file extensions: .RAW, .raw
    • Supported element types:
      • binary data
      • signed 8 bit
      • unsigned 8 bit
      • signed 16 bit
      • unsigned 16 bit
      • signed 32 bit
      • unsigned 32 bit
      • floating point 32 bit
      • floating point 64 bit
  • tif — TIFF 2D-image input/output support. 🗂️
    • Recognized file extensions: .TIF, .TIFF, .tif, .tiff
    • Supported element types:
      • binary data
      • unsigned 8 bit
      • unsigned 16 bit
      • unsigned 32 bit
  • vista — a 2dimage io plugin for vista images. 👀
    • Recognized file extensions: .-, .V, .VISTA, .v, .vista
    • Supported element types:
      • binary data
      • signed 8 bit
      • unsigned 8 bit
      • signed 16 bit
      • unsigned 16 bit
      • signed 32 bit
      • unsigned 32 bit
      • floating point 32 bit
      • floating point 64 bit

🧪 PLUGINS: fastica/implementation

  • internal — This is the MIA implementation of the FastICA algorithm. 🏠
    • (no parameters)
  • itpp — This is the IT++ implementation of the FastICA algorithm. 🧬
    • (no parameters)

🌸 EXAMPLE

Example 🌼

mia-2dmyocard-segment Example
Yes bestie, that's literally the whole example. It's giving minimalism. It's giving work-in-progress. We love her anyway. 🫶

👑 AUTHOR(s)

Gert Wollny 💜

This software is Copyright (c) 1999‐2015 Leipzig, Germany and Madrid, Spain. It comes with ABSOLUTELY NO WARRANTY and you may redistribute it under the terms of the GNU GENERAL PUBLIC LICENSE Version 3 (or later). For more information run the program with the option --copyright. 📜✨

and that's the whole page, bestie!! 🎀 this was mia-2dmyocard-segment, v2.4.7, out of the USER COMMANDS set. slay, hydrate, read your man pages, and may your masks always segment. periodt. 💅🦋

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