MEGAHIT_TOOLKIT(1)

💖 MEGAHIT_TOOLKIT 💖

okay so bestie, meet megahit_toolkit — the ultra-fast and memory-efficient meta-genome assembler 🧬✨ like it literally does genome assembly but somehow doesn't eat all your RAM, iconic behaviour fr fr.

✨ SYNOPSIS ✨

megahit_toolkit <sub_program> [sub options]

so basically you call it with a <sub_program> and then whatever [sub options] that sub-program wants. it's giving "one toolkit, many little tools" 💅

🌸 DESCRIPTION 🌸

welcome to the sub-programs, bestie. here's the whole roster, no skips, no cuts 👑

🦋 sub-programs:

• assemble — assemble from SdBG
• local — local asssembly (yes, the original really does spell it with three s's, I'm not fixing it, that's canon 💀)
• iterate — extract iterative edges
• buildlib — build read library
• count — kmer counting
• read2sdbg — build sdbg from reads
• seq2sdbg — build sdbg from megahit contigs + edges
• contig2fastg — convert MEGAHIT's k*.contigs.fa to fastg format
• readstat — calculate read stats (# of reads, bases, longest, shortest, average)
• filterbylen — filter contigs by length
• checkcpu — check whether the run-time CPU supports POPCNT and BMI2
• checkpopcnt — check whether the run-time CPU supports POPCNT
• checkbmi2 — check whether the run-time CPU supports BMI2
• dumpversion — dump version
• kmax — the largest k value supported

no cap, every single one of these is its own little main character. pick the one you need and go 🫶

👑 AUTHOR 👑

this manpage was written by Shayan Doust for the Debian distribution, and it can be used for any other usage of the program. we love a generous king 💜

and that's the whole vibe check, bestie — megahit_toolkit version 1.2.8, dated October 2019. slay, periodt, go assemble something gorgeous 💅✨🧬