MEGAHIT_CORE_NO_HW_ACCEL(1)

✨ NAME ✨

okay so bestie, meet megahit_core_no_hw_accel — it's an ultra-fast and memory-efficient meta-genome assembler 💖 and it lives in the User Commands corner of the manual, section 1, iykyk.

🌸 SYNOPSIS 🌸

megahit_core_no_hw_accel <sub_program> [sub options]

🦋 DESCRIPTION 🦋

so like, this is the core of it all — and instead of doing one single thing, it's got a whole friend group of sub-programs under it 👑. here's the full roster, no one gets left out:

• assemble — assemble from SdBG ✨
• local — local asssembly (yes the typo is literally canon, we don't touch it 💅)
• iterate — extract iterative edges 🎀
• buildlib — build read library 🍓
• count — kmer counting 🔢
• read2sdbg — build sdbg from reads 🌈
• seq2sdbg — build sdbg from megahit contigs + edges ⭐
• contig2fastg — convert MEGAHIT's k*.contigs.fa to fastg format 🧚
• readstat — calculate read stats (# of reads, bases, longest, shortest, average) 📊
• filterbylen — filter contigs by length 🪄
• checkcpu — check whether the run-time CPU supports POPCNT and BMI2 💀
• checkpopcnt — check whether the run-time CPU supports POPCNT 🙈
• checkbmi2 — check whether the run-time CPU supports BMI2 😭
• dumpversion — dump version 📦
• kmax — the largest k value supported 🔥

bestie note: that's every single one of them, count them, there's fifteen. no skipping. periodt.

💜 AUTHOR 💜

This manpage was written by Shayan Doust for the Debian distribution and can be used for any other usage of the program. 🫶

and that's the whole page, bestie, you ate it 💅✨ this was megahit_core_no_hw_accel version 1.2.8, dating all the way back to October 2019, straight out of the User Commands manual. slay, go assemble something iconic 🌸👑