LEFSE2CIRCLADER.PY(1)

📦 version 1.1.2, in debian bookworm, debian trixie, ubuntu jammy, ubuntu noble, ubuntu questing, ubuntu resolute, ubuntu stonking

🌸 LEFSE2CIRCLADER.PY 🌸

okay bestie, gather round, because we're talking about lefse2circlader.py from the User Commands corner of your manual. it's giving "small script, big glow-up energy" ✨

✨ NAME ✨

lefse2circlader.py — figure out the features of organisms, clades, taxonomic units, and genes 🦋

💖 DESCRIPTION 💖

no cap, here's how you call it:

usage: lefse2circlader.py [-h] [-l levels with label]

       [INPUT_FILE] [OUTPUT_FILE]

so what does it actually do? it converts LEfSe output into Circlader input. that's the whole vibe. 💅

🎀 positional arguments 🎀

these are the ones you just hand over, no flags needed:

  • INPUT_FILE — the input file you're feeding in. if you don't give one, it reads from stdin. shy king behavior, honestly 🫶
  • OUTPUT_FILE — the output file you want it to write to. if you don't give one, it goes to stdout. iconique 🌈

🧚 optional arguments 🧚

the little extras, the accessories of the command line:

  • -h, --help — shows this help message and dips out. classic. exit stage left 💀
  • -l levels with label — yeah okay, this one's literally just sitting there in the manpage with no explanation attached. the manpage said "levels with label" and then simply did not elaborate. main character mystery energy 🔥

👑 AUTHOR 👑

this manpage was written by Andreas Tille for the Debian distribution, and honestly? it can be used for any other usage of the program too. generous fr fr 🫶

and that's the tea, bestie. this page came to you courtesy of lefse2circlader.py version 1.1.2, dated September 2021. go forth and convert your LEfSe output into Circlader input, you absolute legend 💖✨🎀🦋🌸💅👑

📦 where this page comes from