KTIMPORTRDP(1)

ktImportRDP — like, the manual page for it 💅✨

okay bestie, welcome to ktImportRDP(1), a User Commands page, and honestly? it's giving data visualization but make it cute. pull up a chair 🎀

ktImportRDP — explore hierarchical metagenomic data with zoomable pie charts 🥧🌈

It creates a Krona chart from RDP classifications. that's the whole job. iconic behavior, no cap 💖

Here's the shape of the thing, bestie:

ktImportRDP \
  [options] \ rdp_details_1[,name_1] \ [rdp_details_2[,name_2]] \
  ...

rdp_details — RDP assignment details, downloaded as text from the RDP Classifier web portal, OR output by the command line RDP Classifier or Multiclassifier. and here's the tea: by default, separate datasets will be created for each input (see [-c]).
name — a name to show in the list of datasets in the Krona chart. this only kicks in if you've got multiple input files and you did NOT pass [-c]. don't give it one? it'll just use the basename of the file. lazy but valid 💅

[-o <string>] — output file name. [Default: 'rdp.krona.html'] 🍓
[-n <string>] — name of the highest level. [Default: 'root'] 👑
[-c] — combine data from each file, rather than creating separate datasets within the chart. the ✨merge✨ button, essentially.
[-m <number>] — minimum confidence. each query sequence will only be added to taxa that were predicted with a confidence score of at least this value. so like, a vibe check for your predictions 😌
[-d <integer>] — maximum depth of wedges to include in the chart. don't go too deep, babe 🕳️
[-x <integer>] — hue (0-360) for "bad" scores. [Default: '0'] 😭
[-y <integer>] — hue (0-360) for "good" scores. [Default: '120'] ✨
[-u <string>] — URL of Krona resources to use instead of bundling them with the chart (e.g. "http://krona.sourceforge.net"). this reduces size of charts and allows updates, though — and listen — charts will not work without access to this URL. so like, cute until the wifi dips 🫠
[-qp <string>] — url to send query IDs to (instead of listing them) for each wedge. the query IDs will be sent as a comma separated list in the POST variable "queries", with the current dataset index (from 0) in the POST variable "dataset". and the url can include additional variables encoded via GET. nerdy, but make it fashion 🧚

that's the whole page, bestie, you read it, you understood it, main character energy fr. 🫶

ktImportRDP 2.8 🌈, from June 2021 🎀 — signed, sealed, slayed, and officially end of page 💖✨👑

📦 where this page comes from