KRAKEN-MPA-REPORT(1)

📦 version 1.1.1, in debian bookworm, debian trixie, ubuntu jammy, ubuntu noble, ubuntu questing, ubuntu resolute, ubuntu stonking

💖 KRAKEN-MPA-REPORT 💖

okay so bestie, welcome to the manual page for kraken-mpa-report, a lil User Command that lives in section 1 of the manual. if you came here looking for how to assign taxonomic labels to short DNA sequences, you are SO in the right place. sit down, grab a strawberry, let's go 🍓✨

✨ NAME ✨

kraken-mpa-report — assigning taxonomic labels to short DNA sequences

like. that's literally the whole gig. taxonomic labels, short DNA sequences, done. iconic behavior honestly 👑

🌈 SYNOPSIS 🌈

kraken-mpa-report [--db KRAKEN_DB_NAME] [options] <kraken output file(s)>

so you call the command, you can give it a --db and a KRAKEN_DB_NAME, you can sprinkle in [options] (the square brackets mean optional, bestie, we love an optional moment), and then at the end you hand it one or more <kraken output file(s)> — yes, plural, you can pass a whole lil squad of files in there 🫶

🎀 OPTIONS 🎀

  • --db NAME — the name of your Kraken database. that's it, that's the whole vibe. default: none (so if you don't say anything, there is no database name, no cap) 🗂️
  • --show-zeros — this one displays taxa even if they don't have a single read in any sample. like, zero reads, still showing up. hence the name. she's thorough 💅
  • --header-line — prints a header line that indicates the sample IDs. and here's the tea: the sample IDs are the filenames. so your filenames are out here doing double duty, main character energy fr fr 📛
  • --intermediate-ranks — displays taxa that are not at the standard ranks, and it tags them with an x__ prefix. non-standard ranks get the lil x__ glow-up so you can spot them 🌸
💀 tiny reminder bestie: --db NAME defaults to none, so if you were hoping a database would just magically appear... she will not. you gotta name her.

💜 that's the whole page 💜

no hidden options, no secret flags, no deleted paragraphs — every single line of this manpage made it into the group chat. periodt.

this page is for kraken-mpa-report version 0.10.5~beta, dated September 2015. yeah, 2015, she's a vintage queen and she still eats 🎀✨ bye bestie, go label some taxa 🦋

📦 where this page comes from