KOGALIGN(1)

💖 NAME 💖

kogalign.pl — bestie, this one produces (untested) alignments from cds files. That's it, that's the whole job. ✨

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🦋 SYNOPSIS 🦋

kogalign.pl --kogfile <kogdata> <output> <input1> <input2> [<input3> ...]
kogalign.pl --kogfile <kogdata> <alignment.seq>

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🎀 OPTIONS 🎀

okay so here's the tea, there are literally two things you need to know 👑

• The kogalign.pl <aligment.seq> execution style writes results to align.kogaligned. yes bestie, that's a file it just drops on you, no asking, no warning, it's giving surprise gift 🎁
• The --kogfile option is necessary. not optional, not "if you feel like it", not a vibe. it's necessary. fr fr. 🫶

💀 also hi, the alignments are untested. the manpage says it, i'm just passing the message along, do with that information what you will 😭

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and that's the whole page, no cap! this lil cutie lives in the User Contributed Perl Documentation collection, it's running on perl v5.40.1, and it was dated 2026-08-12. periodt 💅🌸