HOMOLOGY-SCORE(1)

🌸 NAME 🌸

okay bestie, so homology-score.pl — it generates homology scorse from murasaki anchor files 💖

(yes, it says "scorse". not a typo I invented, that's just the vibe the original is giving 💀 we're respecting it.)

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✨ SYNOPSIS ✨

filter.pl [options] <murasaki ailgnment file> [output file]

so you run it like that, king 👑 — hand it a murasaki alignment file (the code spells it ailgnment, and honestly? iconic. we don't touch it 💅), and optionally tell it where the output should land.

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🎀 OPTIONS 🎀

• --aligner=<alignment program> — picks which aligner program you wanna use, no cap 🧚
  • clustalw — slow, but lowkey a survivor: it won't die on large anchors 💪
  • muscle — fast, but it dies on anchors longer than 20k 😭 rip
  • default is Muscle 🌈

ngl bestie, that's the whole option list. one flag. she's minimal, she's efficient, she's the main character 😌

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that's literally it fr fr — short, sweet, and exactly as documented. this lil page is perl v5.40.1, dated 2026-08-12, and it's part of the User Contributed Perl Documentation squad 🫶 go generate those scorse, bestie, you got this 💜⭐