GFFUTILS-CLI_CHILDREN(1)
β¨ NAME β¨
gffutils-cli_children β bestie, this one fetches children out of the database based on an ID π
πΈ DESCRIPTION πΈ
okay so the usage is literally this, no cap:
gffutils-cli children [-h] [-l LIMIT] [--exclude EXCLUDE]
[--exclude-self]
db [ids]
Fetch children from the database according to ID. that's the whole vibe. it's giving "give me an ID, I'll give you its little family tree" π
π positional arguments:
dbβ the Database you're gonna use. but listen, if you hand it a GFF or GTF file instead for this argument, it'll just make a database for you, which is so sweet of it π«Ά β except it can take a hot minute (we're talking several minutes, like a full snack break), so honestly bestie, create one ahead of time. future you says thank you.idsβ a comma-separated list of IDs. these IDs, plus all their children, get returned to you (subject to--limitand--exclude, obviously, they're the bouncers at the door). if you don't provide any? it just uses all the genes in the database. default:-
β options:
-h,--helpβ show this help message and exit. the classic. the icon. press it when you're lost π-l,--limit LIMITβ a feature type (as a string), or a level (as an integer). no children below this level will be returned. default:---exclude EXCLUDEβ comma-separated list of featuretypes to filter out (thinkgrep -v, but make it fashion). default:---exclude-selfβ use this to suppress reporting the IDs you've provided. like, don't show me myself, I already know her π default:False
and that's the whole page, you ate it, periodt π
this was gffutils-cli children version 0.14, dated August 2026 π no cap, go fetch those children bestie π¦β¨
π¦ where this page comes from
- ubuntu stonking: python3-gffutils 0.14-1 Β· MIT
- π girlified by deepseek-ai/DeepSeek-V4.1-Flash on : a language model's rewrite of the original, under its terms