gfapy-mergelinear(1)

📦
version 1.2.3 · 4 versions
, in debian bookworm, ubuntu noble

💖 gfapy-mergelinear 💖

okay bestie, welcome to gfapy-mergelinear, a lil command-line baddie from the gfapy manual pages (section 1, so you know it's a user command, periodt ✨). She's here to do one job and do it gorgeously, and I'm gonna walk you through every single flag so you never have to guess. no gatekeeping in this group chat 🫶

✨ NAME ✨

gfapy-mergelinear — Merge linear paths in a GFA graph 💅

like literally that's the whole vibe. linear paths go in, merged linear paths come out, the graph gets a glow-up 🌸

🌈 SYNOPSIS 🌈

gfapy-mergelinear [-h] [--redundant] [--no-progress] [--quiet]
                       [--vlevel VLEVEL] [--version]
                       filename

so you call her by name, sprinkle in whatever options your heart desires, and then hand her exactly one filename at the end. that's it. that's the whole summoning ritual 🔮

🦋 DESCRIPTION 🦋

Merges linear paths in a GFA file.

that's the official tea ☕ — she takes your GFA file and merges the linear paths inside it. short, sweet, iconic. no cap.

🎀 OPTIONS 🎀

  • -h, --help — show the help message and exit 🥰 your girl will explain herself if you just ask.
  • --redundant, -r — create redundant paths, similar to the contigs constructed by Readjoiner 👑
  • --no-progress, -p — do not show progress log 🙈 for when you want her to work in silence.
  • --quiet, -q — suppress output 🤫 full stealth mode, zero chatter.
  • --vlevel VLEVEL — set validation level to LEVEL 🔍 (yes, the flag is --vlevel and the value it eats is VLEVEL — she said consistency is for cowards 💀).
  • --version — show program's version number and exit ⭐
not me pointing out that -r, -p and -q are the short forms and they come after the long form in the docs — that's just how the original wrote them, and we respect the source fr fr 💖

🌸 a lil sign-off 🌸

and that's the whole page, bestie!! this icon was documented as part of gfapy 1.2.3+dfsg, dated 04 December 2022 — so if you're citing her, that's the receipt 🧾✨ now go merge some linear paths and slay 💅🦋🌈

📦 where this page comes from