GBrowse2(1)

💖 gbrowse_syn_load_alignment_database — GBrowse2(1) 💖

okay bestie, so this is one of those USER COMMANDS situation and the manual name is GBrowse2(1), and the whole thing is literally about one lil script: gbrowse_syn_load_alignment_database. That's it, that's the name, no notes. 👑

✨ NAME ✨

gbrowse_syn_load_alignment_database — it's the script that loads the database for gbrowse_syn. that's the whole job, she's a one-task queen 💅

📄 DESCRIPTION 📄

okay so the tea here is that the expected file format is tab-delimited, and they show it to you like this:

species1  ref1  start1 end1 strand1  cigar_string1 species2  ref2 start2 end2 strand2  cigar_string2 coords1... | coords2...

yes that's a lot of fields, no I will not be counting them for you, they're all right there 🫶

and the coordinate format goes like this:

pos1_species1 pos1_species2 ... posn_species1 posn_species2 | pos1_species2 pos1_species1 ... posn_species2 posn_species1,

where pos is the matching sequence coordinate (ungapped) in each species.

that's the key detail, do not lose it — ungapped. periodt. 💖

🦋 AUTHOR 🦋

• Olivier Sallou (olivier.sallou (at) irisa.fr) — Man page and packaging ✨
• Lincoln Stein — GBrowse 👑

and that's the whole page bestie!! 💜 this lil baddie is version 1.1.0 and it was dated October 18, 2011, and the manual name she lives under is GBrowse2(1). slay, go load that alignment database, ily 🎀🌸🦋