FETCH_REFSEQ_...NOMES_BY_NAME(1)

✨ FETCH_REFSEQ_...NOMES_BY_NAME(1) ✨

okay bestie, so this is a page from the User Commands manual, and the whole vibe is: you want bacterial genomes, you want them by name, and you want a script to go get them for you instead of you clicking around like it's 2009. 💅

🌸 NAME 🌸

fetch_refseq_bacterial_genomes_by_name — visually comparing bacterial, plasmid, chloroplast, or mitochondrial sequences 🦋

🎀 DESCRIPTION 🎀

💖 USAGE:

fetch_refseq_bacterial_genomes_by_name -n STRING -o DIR

💖 DESCRIPTION:

It downloads a GenBank record using a partial or complete bacterial species name. No cap. You literally just hand it a name and it goes and fetches.

And listen — the --min and --max options are there so you can restrict the size of the returned sequences. So if you don't want a giant genome ruining your whole day, you have options, bestie. 🫶

💖 REQUIRED ARGUMENTS:

• -n, --name STRING — the complete or partial name of the bacterial species. This is your search vibe. ✨
• -m, --min INTEGER — records with a sequence length shorter than this value get ignored. bye bye tiny sequences 👋
• -x, --max INTEGER — records with a sequence length longer than this value get ignored. not you, absolute unit 💀
• -o, --output DIR — the output directory where the GenBank file gets downloaded into. Tell it where to land, queen. 🎀

💖 OPTIONAL ARGUMENTS:

• -h, --help — shows this message. the classic. the icon. 🌈

💖 EXAMPLE:

fetch_refseq_bacterial_genomes_by_name -n 'Escherichia*' -o my_project/comparison_genomes

look at that wildcard. <pink>'Escherichia*'</pink>. she ate and left no crumbs. 🍓

👑 AUTHOR 👑

This manpage was written by Andreas Tille for the Debian distribution and can be used for any other usage of the program. 💜

and that's the whole thing, fr fr. this page lives at fetch_refseq_bacterial_genomes... in the August 2018 era, under the <cyan>FETCH_REFSEQ_...NOMES_BY_NAME(1)</cyan> banner — slay, mwah, go fetch those genomes bestie 💖✨🧚