FETCH_ALL_REF...ERIAL_GENOMES(1)

💖 NAME 💖

fetch_all_refseq_bacterial_genomes — bestie, this is the one for visually comparing bacterial, plasmid, chloroplast, or mitochondrial sequences 🦠✨

🌈 DESCRIPTION 🌈

✨ USAGE ✨

okay so here's the whole vibe, one line, no notes:

fetch_all_refseq_bacterial_genomes -o DIR

💅 DESCRIPTION 💅

So like, what this actually does: it downloads all bacterial RefSeq sequences from NCBI in GenBank format 🌸 It literally pulls the entire thing, no cap.

And if downloading everything feels a little extra (it is), you can use the --min and --max options to restrict the size of the returned sequences 🎀

👑 REQUIRED ARGUMENTS 👑

• -o, --output DIR — the output directory where all your downloaded GenBank files are gonna live. You need this one, it's not optional, periodt 💅

🦋 OPTIONAL ARGUMENTS 🦋

• -m, --min INTEGER — records with a sequence length shorter than this value get ignored. too tiny? not invited to the party 💀
• -x, --max INTEGER — records with a sequence length longer than this value get ignored. too long? also not invited 🙈
• -h, --help — shows you this message. the classic, iconic, always there for you 🫶

🍓 EXAMPLE 🍓

here's exactly how you'd run it irl:

fetch_all_refseq_bacterial_genomes -o my_project/comparison_genomes

⭐ AUTHOR ⭐

This manpage was written by Andreas Tille for the Debian distribution, and it can be used for any other usage of the program 💜 (iconic of him, honestly)

okay bestie that's the whole page, thanks for reading, love u 🎀 and just so you know — this was fetch_all_refseq_bacterial_gen... from August 2018, the Debian User Commands edition of FETCH_ALL_REF...ERIAL_GENOMES(1). mwah 💖✨