EXTRACTTRANSCRIPTINFO.PY(1)

✨ NAME ✨

okay bestie, so extractTranscriptInfo.py is the girlboss of this manual page EXTRACTTRANSCRIPTINFO.PY(1) — and what she does is extract information about transcripts from a reference Fasta file. that's the whole vibe. 🧬✨

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🌸 SYNOPSIS 🌸

extractTranscriptInfo.py [options] <inputFile> <outputFile>

like, you give her options, an input file, and an output file, and she does her thing 💅

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🦋 DESCRIPTION 🦋

hiiii so let me tell you what's going on here 🫶

This program extracts information about transcripts from a reference Fasta file. periodt.

now, tea time ☕ — this is partially replaced by using SAM header, which however does not include information about transcript-gene grouping. so like, it's not a full glow-up replacement, iykyk 😭

also, the current version of parseAlignment extracts this information from a reference sequence file — which is literally making this script obsolete 💀. she ate but she's also kinda retired, no cap.

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🎀 OPTIONS 🎀

• -h, --help — show this help message and exit 👑 (the classic, iconic, never-misses)
• -v, --verbose — Verbose output 🗣️✨ she'll tell you what she's doing
• -t TYPE, --type=TYPE — Type of file to parse: ensembl, cuff, other 🍓 like, pick your flavor bestie

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ngl the options list is short and the script is obsolete, but she's still serving 💖 not every queen has to be in her prime to be iconic

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okay and for the cute little sign-off: this page is extractTranscriptInfo.py 0.7...., dated September 2021, and it lives under the manual EXTRACTTRANSCRIPTINFO.PY(1) in User Commands. slay, bye bestie 💅🌈🎀