EXTRACTSAMPLES(1)

📦
version 0.7.5 · 4 versions
, in ubuntu jammy, ubuntu noble

✨ extractSamples ✨

okay bestie, pull up a chair 💅 this one lives in the User Commands section of your manual, and it's literally the lil tool that goes snip snip on your MCMC samples and hands you back just the transcripts you asked for. group-chat energy, but make it bioinformatics 🧬💖

🫶 NAME

extractSamples — extract MCMC samples of selected transcripts 🎀

🦋 SYNOPSIS

extractSamples -o <outFileName>  [OPTIONS] [sampleFiles]

like. that's it. that's the whole vibe. -o is the only thing that is NOT optional here, so don't come to the function without it fr fr 😭

🌸 DESCRIPTION

Extracts MCMC samples of selected transcripts. periodt. 💫

[sampleFiles] should contain transposed MCMC samples.

not me emphasising transposed — bestie that word is doing so much heavy lifting in this sentence, please read it twice 🙈 the file has to be the transposed kind or this whole thing is giving nothing.

👑 OPTIONS

  • --help — shows you this help info. the classic. the icon. ask it and it shall answer 🫶
  • -L <list> , --list=<list> — comma delimited list of ZERO-BASED transcript ids (i.e. lines) which should be extracted, like this: 0,17,47,1024,4777. ngl zero-based is the moment — so the very first transcript is 0, not 1, don't get caught slipping 💀
  • -o <outFileName> , --outFile=<outFileName> — name of the output file. your lil gift to future you 🎁
  • -r <randomN> , --random=<randomN> — choose random [randomN] transcripts. chaos mode, but make it validated 🌈
  • -v , --verbose — verbose output. (default: Off) so if you want the play-by-play commentary, you gotta ask for it ✨

💜 cute sign-off

that's the whole manual bestie, no notes, ate 💅 this page is extractSamples 0.7.5+dfsg, dated September 2021 — so it's vintage, it's iconic, it's still slaying on your terminal. go extract your samples and be the main character of your own pipeline 🌸🦋💖

📦 where this page comes from