TERMINATE(1)

💖 TERMINATE(1) 💖

okay bestie, so this is the TERMINATE(1) manual page, straight from the General Commands Manual, and it's literally all about calling complex structural variants using double paired-end signatures ✨

🌸 NAME 🌸

terminate — Complex SVs using double paired-end signatures 🧬💅

✨ SYNOPSIS ✨

dpe [OPTIONS] <deldup.bcf>

like, that's the whole vibe. you run dpe, you hand it your <deldup.bcf>, you throw options at it if you're feeling fancy 🎀

🦋 OPTIONS 🦋

• -?, --help — shows the help message. the "hey bestie what do i even do" button 🫶
• -s, --svsize arg (default 50000) — the max. SV size, fr fr. this is the ceiling for how big a structural variant is allowed to be 👑
• -c, --carconc arg (default 0.75) — the min. carrier concordance. lowkey the threshold for how much the carriers gotta agree 💯
• -f, --outfile arg (default "complexSV.bcf") — the complex SV output file. this is where all your results get written, so pick a name you'll actually remember 🙈

ngl bestie, -s, -c and -f all take an argument, so don't just yeet the flag on its own — it needs a value, periodt.

💜 CONTACT 💜

Tobias Rausch (rausch@embl.de) — the main character behind this whole thing, go say hi 🌈

okay that's the whole page!! it's from the User Commands collection, dated July 2018, and that's literally the entire thing — no notes, you ate this 🍓✨💖