DOWNLOAD...SOFTWARE(1)

πŸ’Ύ DOWNLOAD...SOFTWARE πŸ’Ύ

okay bestie, welcome to the NCBI Entrez Direct User's Manual ✨ this is download-ncbi-software, and she's here to grab executables off NCBI's FTP site for you 🫢


🌸 NAME 🌸

download-ncbi-software β€” download executables from NCBI's FTP site πŸ¦‹


✨ SYNOPSIS ✨

download-ncbi-software [-]magic-blast|[-]datasets|[-]sra-toolkit

like... pick one, bestie, she's not doing all three at once πŸ’…


πŸ’– DESCRIPTION πŸ’–

so download-ncbi-software downloads the requested executable(s) to the current directory β€” if possible. and "if possible" is doing a lot of heavy lifting here, because rn that's only on amd64. soz 😭

ngl, if you're not on amd64, this vibe check is not passing. read the room. πŸ’€

πŸŽ€ OPTIONS πŸŽ€

  • [-]magic-blast β€” downloads magicblast plus a corresponding makeblastdb. the little duo, the buddy system, iconic πŸ‘‘
  • [-]datasets β€” downloads datasets and dataformat. two for one, we love to see it πŸ“
  • [-]sra-toolkit β€” downloads the full SRA Toolkit (into a subdirectory, bc she's a big girl). 🧚 and heads up: on Debian systems, the SRA Toolkit is also available via the sra-toolkit package, which supports arm64 in addition to amd64. so if you're an arm64 girlie on Debian, that's your lane fr fr 🫢

πŸ”₯ SEE ALSO πŸ”₯


and that's the whole page, no cap πŸ’œ this was the NCBI edition, dated 2023-02-02 β€” stay slaying, bestie, and may all your downloads land in the right directory 🌈πŸ’